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Class IMassGraph 

java.lang.Object
   |
   +----java.awt.Component
           |
           +----java.awt.Canvas
                   |
                   +----DragCanvas
                           |
                           +----BaseGraph
                                   |
                                   +----BaseMassGraph
                                           |
                                           +----IMassGraph
class IMassGraph
extends BaseMassGraph

Variable Index

o decalList
the attached displacement list for peptide masses
o FLog
o FTolerated
calculate the tolerance vector (explained above)
o MassNames
o MassVector
the current petide vector
o MassVectors
all plotted vectors with their respective names

Constructor Index

o IMassGraph(int, int, int, int)

Method Index

o adjustMinMax(PeptVect)
o calcTolerated(float)
o calcTolerated(String)
calculate the tolerance vector
o drawPeptLegend(Graphics, int, String)
draw the Peptide Mass plot legend
o getAddVector()
o getDecalList()
o getMassVector()
o getTolerated()
o paint(Graphics)
paint the object # adjust the multiply factor # set the wire option depending on the location of the vector # paint legend
o paintMassVector(Graphics)
paint the current mass vector
o paintTolVector(Graphics)
paint the tolVector, a tolerance vector is a series of peptide masses matching between the first and the second peptide vector in the mass series
o setLog(boolean)
set the log() factor, explained in PeptVect, do not forget to adjust min/max
o setMassDecal(float)
o setMassDecal(String)
o setMassNames(Vector)
o setMassVector(PeptVect)
o setMassVectors(Vector)

Variables

o decalList 
 private Choice decalList
the attached displacement list for peptide masses

o MassVector 
 private PeptVect MassVector
the current petide vector

o MassVectors 
 private Vector MassVectors
all plotted vectors with their respective names

o MassNames 
 private Vector MassNames
o FTolerated 
 private int FTolerated
calculate the tolerance vector (explained above)

o FLog 
 private boolean FLog

Constructors

o IMassGraph 
 public IMassGraph(int iXPos,
                   int iYPos,
                   int iWidth,
                   int iHeight)

Methods

o getDecalList 
 public Choice getDecalList()
o setMassDecal 
 public boolean setMassDecal(String sValue)
o setMassDecal 
 public boolean setMassDecal(float Value)
o getMassVector 
 public PeptVect getMassVector()
o getAddVector 
 public PeptVect getAddVector()
o setMassVectors 
 public void setMassVectors(Vector iMassVectors)
o setMassNames 
 public void setMassNames(Vector iMassNames)
o adjustMinMax 
 private void adjustMinMax(PeptVect iMassVector)
o setMassVector 
 public void setMassVector(PeptVect iMassVector)
o paintTolVector 
 public void paintTolVector(Graphics g)
paint the tolVector, a tolerance vector is a series of peptide masses matching between the first and the second peptide vector in the mass series

o paintMassVector 
 public void paintMassVector(Graphics g)
paint the current mass vector

o drawPeptLegend 
 private void drawPeptLegend(Graphics g,
                             int factor,
                             String iLegend)
draw the Peptide Mass plot legend

o paint 
 public void paint(Graphics g)
paint the object # adjust the multiply factor # set the wire option depending on the location of the vector # paint legend

Overrides:
paint in class DragCanvas
o calcTolerated 
 public void calcTolerated(String sTol)
calculate the tolerance vector

o calcTolerated 
 public void calcTolerated(float tol)
o getTolerated 
 public int getTolerated()
o setLog 
 public boolean setLog(boolean Value)
set the log() factor, explained in PeptVect, do not forget to adjust min/max

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