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Class IMassZoom 

java.lang.Object
   |
   +----java.awt.Component
           |
           +----java.awt.Canvas
                   |
                   +----DragCanvas
                           |
                           +----BaseGraph
                                   |
                                   +----BaseMassGraph
                                           |
                                           +----IMassZoom
class IMassZoom
extends BaseMassGraph

Variable Index

o FPeptVector
we look at two vectors only, see note in BaseMassGraph for implementation options
o FSecVector
o FTolValue
o M_WIDTH
o MassListEnd
selectors from min and max masses for zoom
o MassListStart
selectors from min and max masses for zoom
o massSet

Constructor Index

o IMassZoom(int, int, int, int)

Method Index

o addZoom(PeptVect, float, float)
add a new zoom vector, adjust multiply factor and recalc the minmax values
o addZoom(PeptVect, String, String)
add zoom from minMass to maxMass
o adjustMinMax()
o calcTolerated(float)
o calcTolerated(String)
we're interested in matching masses, so using a tolerance, calculate the matching masses in order to plot them later
o getZoomListEnd()
o getZoomListStart()
o paint(Graphics)
glob paint loop, axis, frame, etc...
o paintAddVector(Graphics)
paint the second vector
o paintTolVector(Graphics)
show points that have matched the tolerance
o paintZoomVector(Graphics)
paint the zoom vector
o Reshape()
o setLog(boolean)
o setZoom(PeptVect, float, float)
o setZoom(PeptVect, float, float, PeptVect)
o setZoom(PeptVect, String, String)
(re)set zoom from minMass to maxMass
o setZoomVector(PeptVect)
set a zoom source vector and create two lists with values from peptide masses from that vector

Variables

o FPeptVector 
 private PeptVect FPeptVector
we look at two vectors only, see note in BaseMassGraph for implementation options

o FSecVector 
 private PeptVect FSecVector
o MassListStart 
 List MassListStart
selectors from min and max masses for zoom

o MassListEnd 
 List MassListEnd
selectors from min and max masses for zoom

o massSet 
 private boolean massSet
o M_WIDTH 
 static int M_WIDTH
o FTolValue 
 float FTolValue

Constructors

o IMassZoom 
 public IMassZoom(int iXPos,
                  int iYPos,
                  int iWidth,
                  int iHeight)

Methods

o setZoom 
 public void setZoom(PeptVect FMassVector,
                     String minMass,
                     String maxMass)
(re)set zoom from minMass to maxMass

o addZoom 
 public void addZoom(PeptVect FMassVector,
                     String minMass,
                     String maxMass)
add zoom from minMass to maxMass

o addZoom 
 public void addZoom(PeptVect FMassVector,
                     float minMass,
                     float maxMass)
add a new zoom vector, adjust multiply factor and recalc the minmax values

o setZoom 
 public void setZoom(PeptVect FMassVector,
                     float minMass,
                     float maxMass)
o setZoom 
 public void setZoom(PeptVect FMassVector,
                     float minMass,
                     float maxMass,
                     PeptVect FPeptVector)
o adjustMinMax 
 private void adjustMinMax()
o getZoomListStart 
 public List getZoomListStart()
o getZoomListEnd 
 public List getZoomListEnd()
o setZoomVector 
 public void setZoomVector(PeptVect FMassVector)
set a zoom source vector and create two lists with values from peptide masses from that vector

o paintAddVector 
 public void paintAddVector(Graphics g)
paint the second vector

o paintZoomVector 
 public void paintZoomVector(Graphics g)
paint the zoom vector

o Reshape 
 public void Reshape()
o paint 
 public void paint(Graphics g)
glob paint loop, axis, frame, etc...

Overrides:
paint in class DragCanvas
o setLog 
 public boolean setLog(boolean Value)
o calcTolerated 
 public void calcTolerated(String sTol)
we're interested in matching masses, so using a tolerance, calculate the matching masses in order to plot them later

o calcTolerated 
 public void calcTolerated(float tol)
o paintTolVector 
 public void paintTolVector(Graphics g)
show points that have matched the tolerance

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