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You can launch an application on data you found in one of
the databanks or with your own data. Application results are stored as
user databanks. You can query the application results just like any other
databank, and if the application was a similarity search against one of
the databanks available in SRS, the results may be linked to those databanks.
Additionally, the results of an application can be used by another
application. "ClustalW" takes the results of other applications, "BlastP",
for example, and performs an alignment on those results. The "Hmm" family
of applications takes results from other applications or raw data and searches
that data.
For example, you could begin with "BlastP", run the results through
"ClustalW", and run a Hidden Markov Marker ("Hmm") on those results.
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