METHOD about: | ../../../doc/explain_methods.html#PX_about_yaspin |
METHOD url: | yaspin |
TYPE : | sec |
NPROT : | 40 |
NWEEKS : | 10 |
NOTE 1 : | here ALL results obtained for yaspin in month 2004_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2004_01 | dssp | ALL_proteins:psum | 66.5 | 62 | 86 | 73 | 48 | 75 | 70 | 67.2 | 68.4 | 79.7 | 70.3 | 11.6 | 0.37 | 0.38 | 0.35 | 0.58 | 0.48 | 0.54 | 8500.0 | 18.0 | 14.1 |
sec | 2004_01 | dssp | ALL_proteins:sig | 20.3 | 35 | 40 | 53 | 38 | 16 | 18 | 21.1 | 33.8 | 26.6 | 19.2 | 18.5 | 0.21 | 0.21 | 0.21 | 0.32 | 0.40 | 0.22 | 8522.2 | 21.6 | 19.5 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 3.2 | 5 | 6 | 8 | 6 | 2 | 2 | 3.3 | 5.3 | 4.2 | 3.0 | 2.9 | 0.03 | 0.03 | 0.03 | 0.05 | 0.06 | 0.03 | 1347.4 | 3.4 | 3.0 |
sec | 2004_01 | dssp | THIS_month:psum | 70.6 | 64 | 72 | 63 | 50 | 73 | 74 | 69.6 | 70.6 | 58.8 | 68 | 5.6 | 0.31 | 0.32 | 0.31 | 0.54 | 0.46 | 0.53 | 100 | 9.6 | 4 |
sec | 2004_01 | dssp | 1m36:A | 71.9 | 100 | 62 | 50 | 50 | 61 | 91 | 76.6 | 100 | 37 | 72 | 3.1 | 0.35 | 0.36 | 0.35 | 0.67 | 0.42 | 0.55 | 100.0 | 18.0 | 0.00 |
sec | 2004_01 | dssp | 1nnv:A | 65.1 | 50 | 52 | 65 | 46 | 71 | 82 | 53.6 | 62 | 69 | 48 | 10.3 | 0.19 | 0.20 | 0.19 | 0.37 | 0.40 | 0.51 | 100.0 | 0.00 | 8.0 |
sec | 2004_01 | dssp | 1p57:A | 67.0 | 18 | 40 | 73 | 71 | 83 | 68 | 64.9 | 10 | 69 | 85 | 8.2 | 0.21 | 0.20 | 0.23 | 0.15 | 0.57 | 0.52 | 100.0 | 11.0 | 0.00 |
sec | 2004_01 | dssp | 1p94:A | 72.0 | 78 | 93 | 57 | 33 | 67 | 65 | 62.7 | 84 | 41 | 48 | 0.0 | 0.38 | 0.40 | 0.36 | 0.74 | 0.36 | 0.42 | 100.0 | 8.0 | 6.0 |
sec | 2004_01 | dssp | 1pc6:A | 78.0 | 88 | 90 | 63 | 60 | 68 | 68 | 84.3 | 100 | 68 | 68 | 0.7 | 0.42 | 0.42 | 0.42 | 0.78 | 0.55 | 0.52 | 100.0 | 0.00 | 0.00 |
sec | 2004_01 | dssp | 1q7l:B | 70.1 | 51 | 95 | 75 | 42 | 91 | 70 | 75.9 | 68 | 69 | 87 | 11.4 | 0.32 | 0.34 | 0.32 | 0.56 | 0.47 | 0.65 | 100.0 | 21.0 | 10.0 |
sec | 2004_01 | dssp | THIS_month:psum | 70.6 | 64 | 72 | 63 | 50 | 73 | 74 | 69.6 | 70.6 | 58.8 | 68 | 5.6 | 0.31 | 0.32 | 0.31 | 0.54 | 0.46 | 0.53 | 100 | 9.6 | 4 |
sec | 2004_01 | dssp | ALL_proteins:psum | 66.5 | 62 | 86 | 73 | 48 | 75 | 70 | 67.2 | 68.4 | 79.7 | 70.3 | 11.6 | 0.37 | 0.38 | 0.35 | 0.58 | 0.48 | 0.54 | 8500.0 | 18.0 | 14.1 |
sec | 2004_01 | dssp | ALL_proteins:sig | 20.3 | 35 | 40 | 53 | 38 | 16 | 18 | 21.1 | 33.8 | 26.6 | 19.2 | 18.5 | 0.21 | 0.21 | 0.21 | 0.32 | 0.40 | 0.22 | 8522.2 | 21.6 | 19.5 |
sec | 2004_01 | dssp | ALL_proteins:errsig | 3.2 | 5 | 6 | 8 | 6 | 2 | 2 | 3.3 | 5.3 | 4.2 | 3.0 | 2.9 | 0.03 | 0.03 | 0.03 | 0.05 | 0.06 | 0.03 | 1347.4 | 3.4 | 3.0 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |