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EVA summary for category threading, best of first 5 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 664 270 method/index.html
3D-PSSM   484219method/3dpssm.html
BLAST   534232method/blast.html
FUGUE   564237method/fugue.html
Libellula   15980method/libellula.html
Prospect   15073method/prospect.html
PSI-BLAST   548236method/psiblast.html
SAMt99   220137method/samt99.html
ssearch   537230method/ssearch.html
Superfamily   297130method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11513D-PSSM10
8.2
(+/-1.3)		5
3.5
(+/-0.3)		10
3.4
(+/-2.8)		11
8.4
(+/-1.9)		30.4
(+/-6.8)		40.6
(+/-7.6)
BLAST0
2.1
(+/-0.2)		0
2.6
(+/-0.1)		2
-8.9
(+/-2.2)		3
-0.3
(+/-0.9)		10.2
(+/-4.4)		14.6
(+/-5.3)
FUGUE12
9.1
(+/-1.2)		7
4.0
(+/-0.3)		10
4.8
(+/-2.7)		13
9.0
(+/-1.9)		30.5
(+/-7.0)		40.0
(+/-8.2)
Libellula9
8.5
(+/-1.5)		5
3.3
(+/-0.3)		8
5.2
(+/-3.8)		11
6.0
(+/-2.3)		24.2
(+/-5.8)		35.2
(+/-7.4)
Prospect9
8.0
(+/-1.4)		6
3.4
(+/-0.3)		9
6.1
(+/-3.3)		12
6.5
(+/-2.4)		19.7
(+/-5.6)		30.2
(+/-6.4)
PSI-BLAST4
4.0
(+/-0.9)		2
3.0
(+/-0.2)		4
-4.9
(+/-3.7)		3
1.2
(+/-2.1)		14.3
(+/-4.6)		20.1
(+/-5.5)
SAMt997
5.7
(+/-1.3)		4
3.0
(+/-0.3)		6
2.3
(+/-4.5)		10
7.1
(+/-2.1)		27.9
(+/-7.2)		34.3
(+/-8.0)
ssearch2
3.2
(+/-0.7)		2
3.0
(+/-0.2)		3
-2.8
(+/-1.6)		8
2.3
(+/-0.9)		10.5
(+/-5.4)		16.4
(+/-6.6)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 26613D-PSSM44
9.1
(+/-0.9)		29
3.6
(+/-0.1)		26
1.1
(+/-1.5)		48
9.2
(+/-1.2)		34.7
(+/-3.8)		42.9
(+/-4.0)
BLAST18
3.6
(+/-0.3)		12
2.8
(+/-0.1)		13
-6.2
(+/-1.9)		30
2.5
(+/-1.1)		19.9
(+/-3.4)		24.2
(+/-3.7)
FUGUE42
8.4
(+/-0.8)		30
3.7
(+/-0.1)		26
0.9
(+/-1.2)		52
9.6
(+/-1.2)		33.3
(+/-3.9)		42.4
(+/-4.2)
PSI-BLAST19
4.7
(+/-0.6)		10
2.7
(+/-0.2)		11
-7.5
(+/-1.8)		25
1.4
(+/-1.2)		19.1
(+/-3.1)		24.3
(+/-3.4)
SAMt9940
7.4
(+/-0.7)		26
3.5
(+/-0.2)		20
-0.7
(+/-1.8)		46
9.1
(+/-1.3)		33.6
(+/-4.0)		40.3
(+/-4.3)
ssearch26
5.6
(+/-0.7)		19
3.2
(+/-0.1)		17
-0.7
(+/-1.3)		33
5.3
(+/-1.3)		21.6
(+/-3.8)		28.3
(+/-4.2)
Superfamily32
6.1
(+/-0.7)		18
3.2
(+/-0.1)		15
-0.8
(+/-1.4)		39
5.7
(+/-1.3)		28.2
(+/-3.9)		34.6
(+/-4.1)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 313313D-PSSM95
9.1
(+/-0.5)		57
3.6
(+/-0.1)		62
2.7
(+/-0.9)		103
9.7
(+/-0.9)		30.9
(+/-2.6)		39.7
(+/-2.7)
BLAST27
3.2
(+/-0.2)		15
2.6
(+/-0.1)		25
-6.2
(+/-1.2)		46
2.0
(+/-0.8)		16.0
(+/-2.3)		19.9
(+/-2.4)
FUGUE93
8.6
(+/-0.5)		67
3.8
(+/-0.1)		62
2.7
(+/-0.8)		107
10.4
(+/-0.8)		29.6
(+/-2.7)		38.2
(+/-2.9)
PSI-BLAST46
4.9
(+/-0.4)		26
2.8
(+/-0.1)		28
-5.7
(+/-1.3)		50
2.8
(+/-0.9)		19.4
(+/-2.3)		24.3
(+/-2.4)
SAMt9981
7.1
(+/-0.5)		48
3.3
(+/-0.1)		47
0.9
(+/-1.2)		88
8.3
(+/-0.9)		29.5
(+/-2.7)		35.7
(+/-2.9)
ssearch47
4.8
(+/-0.4)		32
3.0
(+/-0.1)		33
-0.0
(+/-0.8)		65
5.6
(+/-0.9)		19.1
(+/-2.6)		24.8
(+/-2.9)

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