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EVA summary for category threading, best of first 1 hits (2)

Contents

About threading prediction methods evaluated

Method NprotNweekDetailed results for method
ALL 664 270 method/index.html
3D-PSSM   484219method/3dpssm.html
BLAST   534232method/blast.html
FUGUE   564237method/fugue.html
Libellula   15980method/libellula.html
Prospect   15073method/prospect.html
PSI-BLAST   548236method/psiblast.html
SAMt99   220137method/samt99.html
ssearch   537230method/ssearch.html
Superfamily   297130method/superfamily.html

 


Comparison of threading prediction methods (detail level 2)

Averages compiled over different subsets

(...) contain standard error of a mean

 


Set 1

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 11513D-PSSM8
6.3
(+/-1.4)		4
2.9
(+/-0.3)		6
0.6
(+/-2.5)		8
4.8
(+/-2.0)		22.8
(+/-6.8)		32.1
(+/-8.1)
BLAST0
1.5
(+/-0.2)		0
1.9
(+/-0.2)		1
-13.8
(+/-3.4)		1
-3.2
(+/-1.6)		8.0
(+/-3.4)		11.2
(+/-4.5)
FUGUE7
6.7
(+/-1.3)		5
3.5
(+/-0.3)		9
2.4
(+/-2.6)		8
6.2
(+/-2.2)		25.5
(+/-7.4)		32.1
(+/-8.4)
Libellula6
5.7
(+/-1.4)		3
2.2
(+/-0.4)		5
-1.1
(+/-2.3)		8
2.0
(+/-2.2)		15.4
(+/-5.2)		24.6
(+/-7.2)
Prospect9
6.7
(+/-1.5)		6
3.0
(+/-0.4)		7
1.3
(+/-3.5)		7
2.7
(+/-2.3)		16.1
(+/-5.5)		25.2
(+/-6.9)
PSI-BLAST3
3.3
(+/-1.0)		2
1.9
(+/-0.4)		2
-13.9
(+/-3.5)		2
-2.5
(+/-2.3)		10.0
(+/-3.6)		15.1
(+/-5.0)
SAMt996
5.3
(+/-1.3)		4
2.9
(+/-0.3)		6
1.1
(+/-4.3)		9
6.9
(+/-2.2)		27.2
(+/-7.2)		33.3
(+/-8.2)
ssearch2
2.5
(+/-0.8)		2
2.3
(+/-0.3)		2
-4.3
(+/-1.6)		4
-0.1
(+/-1.3)		9.2
(+/-5.5)		13.2
(+/-6.9)

 


Set 2

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 26613D-PSSM38
7.7
(+/-0.9)		17
3.1
(+/-0.2)		17
-1.6
(+/-1.3)		40
6.2
(+/-1.3)		28.6
(+/-3.8)		36.0
(+/-4.1)
BLAST17
3.1
(+/-0.3)		9
2.3
(+/-0.1)		12
-9.6
(+/-1.8)		23
0.7
(+/-1.1)		17.7
(+/-3.3)		22.5
(+/-3.6)
FUGUE31
7.1
(+/-0.9)		21
3.2
(+/-0.2)		17
-1.2
(+/-1.3)		38
6.8
(+/-1.3)		29.1
(+/-4.0)		36.6
(+/-4.3)
PSI-BLAST15
3.5
(+/-0.6)		8
2.1
(+/-0.2)		6
-12.2
(+/-1.8)		19
-0.9
(+/-1.2)		15.5
(+/-3.1)		20.4
(+/-3.4)
SAMt9937
6.5
(+/-0.7)		18
3.1
(+/-0.2)		17
-4.0
(+/-1.7)		39
6.0
(+/-1.3)		29.0
(+/-3.9)		36.0
(+/-4.3)
ssearch20
4.5
(+/-0.7)		13
2.7
(+/-0.2)		14
-2.8
(+/-1.2)		25
3.1
(+/-1.2)		18.8
(+/-3.6)		24.3
(+/-4.1)
Superfamily31
5.5
(+/-0.6)		16
2.8
(+/-0.2)		14
-6.7
(+/-1.9)		35
4.1
(+/-1.2)		25.2
(+/-3.7)		31.8
(+/-4.1)

 


Set 3

 Sorted alphabetically for identical ranks!     MORE SCORES    
subset nprot rank Method Sgnf(-lnP_MMT) -lnP_MMT Sgnf(Z_CE) Z_CE Sgnf(Q_LG1) Q_LG1 Sgnf(Q_LG2) Q_LG2 N3.5A_Gbl% N5A_Gbl%
common 313313D-PSSM76
7.3
(+/-0.5)		37
3.0
(+/-0.1)		39
-0.3
(+/-0.8)		80
5.9
(+/-0.9)		24.3
(+/-2.5)		32.2
(+/-2.8)
BLAST23
2.6
(+/-0.2)		11
2.1
(+/-0.1)		21
-9.5
(+/-1.2)		34
0.3
(+/-0.7)		13.9
(+/-2.2)		17.7
(+/-2.4)
FUGUE65
6.6
(+/-0.5)		48
3.2
(+/-0.1)		40
-0.6
(+/-1.0)		74
6.6
(+/-0.9)		24.9
(+/-2.7)		31.9
(+/-2.9)
PSI-BLAST35
3.8
(+/-0.4)		22
2.2
(+/-0.1)		19
-10.7
(+/-1.2)		40
0.4
(+/-0.9)		15.2
(+/-2.1)		20.0
(+/-2.4)
SAMt9973
6.1
(+/-0.5)		33
3.0
(+/-0.1)		42
-1.7
(+/-1.1)		78
6.0
(+/-0.9)		26.2
(+/-2.7)		32.2
(+/-2.9)
ssearch37
3.9
(+/-0.4)		24
2.5
(+/-0.1)		26
-1.7
(+/-0.8)		46
3.0
(+/-0.9)		16.7
(+/-2.5)		21.1
(+/-2.8)

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