COMPUTATIONAL SYSTEMS BIOLOGY GROUP

Software & Web Servers

You can find more information about these systems following the links above and in the corresponding publications.

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PMIDigest

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Interactive Review of Large Collections of PubMed Entries to Distill Relevant Information.

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MBROLE 3.0

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Enrichment analysis of metabolomic data. (old MBROLE1 and MBROLE2 servers).

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CoMent

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Interactive browsing and retrieval of relationships between biomedical concepts inferred from the scientific literature.

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iFragMent

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Assigment of chemical compounds to biological pathways using a profile-based approach.

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BiodegPred

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Web server for the concomitant prediction of environmental biodegradability and mamalian toxicity of chemical compounds.

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WeReview: CRISPR Tools

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Live on-line repository of computational tools to assist researches at different stages of a CRISPR/Cas experiment.

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Bacterial Feature Finder (BaFF)

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A system for extracting features overrepresented in sets of prokaryotic organisms.

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ODCs

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Connections between rare diseases through shared genes and protein interactions

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Breaking-Cas

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gRNA design for CRISPR/Cas experiments for the all eucaryotic genomes available in ENSEMBL.

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pMT

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Detection of significant protein co-evolution.

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COPRED

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Prediction of fold, GO molecular function and functional residues at the domain level.

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JDet

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Interactive calculation and visualization of function-related conservation patterns in protein multiple sequence alignments and structures.

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Mirrortree server

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Interactive study of the co-evolution of protein families.

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Scop2go database

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Gene Ontology molecular function annotations at the structural domain level.

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BDPserver

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Prediction of environmental fate for chemical compounds.

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(TAG)TSEMA server

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Prediction of pairings between members of families of interacting proteins based on similarity of evolutionary histories.

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TreeDet server

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Prediction of functional positions in multiple sequence alignments.

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EVA server

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Continuous and real-time evaluation of protein structure prediction servers.

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Mirrortree/Tol-mirrortree programs

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- Prediction of interaction partners based on similarity of evolutionary histories.

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Xdet/Mtreedet programs

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Prediction of functional positions in protein multiple alignments.