EVA: Detailed information for proteins added on: 2001_11_07

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_11_07	1goe	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HORMONE	MOLECULE: CORTICOTROPIN RELEASING HORMONE; CHAIN: A; MUTATION: YES; OTHER_DETAILS: SYNTHETIC ANALOGUE WITH ISOLEUCINE-AMIDE C-TERMINUS	SYNTHETIC: YES; OTHER_DETAILS: SYNTHETIC ANALOGUE SYNTHESIZED THROUGH SOLID PHASE SYNTHESIS USING FMOC/TBU SYNTHETIC PROTOCOLS. NATIVE PHE12 AND LEU15 HAS BEEN SUBSTITUTED BY D-PHE AND ALPHA-AMINOISOBUTYRIC ACID	G.A.SPYROULIAS,S.PAPAZACHARIAS,G.PAIRAS,P.CORDOPATIS	1goe	2001_11_07
2001_11_07	1go9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HORMONE	MOLECULE: CORTICOTROPIN RELEASING HORMONE; CHAIN: A; MUTATION: YES; OTHER_DETAILS: SYNTHETIC ANALOGUE WITH ISOLEUCINE-AMIDE C-TERMINUS	SYNTHETIC: YES; OTHER_DETAILS: SYNTHETIC ANALOGUE SYNTHESIZED THROUGH SOLID PHASE SYNTHESIS USING FMOC/TBU SYNTHETIC PROTOCOLS. NATIVE PHE12 AND LEU15 HAS BEEN SUBSTITUTED BY D-PHE AND ALPHA-AMINOISOBUTYRIC ACID	G.A.SPYROULIAS,S.PAPAZACHARIAS,G.PAIRAS,P.CORDOPATIS	1go9	2001_11_07
2001_11_07	1jyo	E	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: SICP; CHAIN: A, B, C, D; ENGINEERED: YES; MOLECULE: PROTEIN TYROSINE PHOSPHATASE SPTP; CHAIN: E, F; ENGINEERED: YES	SALMONELLA TYPHIMURIUM; BACTERIA; VERSION OF PHARMACIA VECTOR; SALMONELLA TYPHIMURIUM; BACTERIA; VERSION OF PHARMACIA VECTOR;	C.E.STEBBINS,J.E.GALAN	1jyo	2001_11_07
2001_11_07	1k5j	C	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: NUCLEOPLASMIN CORE; CHAIN: A, B, C, D, E; FRAGMENT: NUCLEOPLASMIN CORE; ENGINEERED: YES; MUTATION: YES	XENOPUS LAEVIS; GENE: NUCLEOPLASMIN;	S.DUTTA,I.V.AKEY,C.DINGWALL,K.L.HARTMAN,T.LAUE,R.T.NOLTE, J.F.HEAD,C.W.AKEY	1k5j	2001_11_07
2001_11_07	1jyo	F	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: SICP; CHAIN: A, B, C, D; ENGINEERED: YES; MOLECULE: PROTEIN TYROSINE PHOSPHATASE SPTP; CHAIN: E, F; ENGINEERED: YES	SALMONELLA TYPHIMURIUM; BACTERIA; VERSION OF PHARMACIA VECTOR; SALMONELLA TYPHIMURIUM; BACTERIA; VERSION OF PHARMACIA VECTOR;	C.E.STEBBINS,J.E.GALAN	1jyo	2001_11_07
2001_11_07	1k5j	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	CHAPERONE	MOLECULE: NUCLEOPLASMIN CORE; CHAIN: A, B, C, D, E; FRAGMENT: NUCLEOPLASMIN CORE; ENGINEERED: YES; MUTATION: YES	XENOPUS LAEVIS; GENE: NUCLEOPLASMIN;	S.DUTTA,I.V.AKEY,C.DINGWALL,K.L.HARTMAN,T.LAUE,R.T.NOLTE, J.F.HEAD,C.W.AKEY	1k5j	2001_11_07

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field