| METHOD about: | ../../doc/explain_methods.html#PX_about_sspro1 |
| METHOD url: | SSpro1 |
| METHOD quote: | P Baldi, S Brunak, P Frasconi, G Pollastri, G Soda:: Exploiting the past and the future in protein secondary structure prediction. Bioinformatics 15, 937-946, 1999 |
| TYPE : | sec |
| NPROT : | 275 |
| NWEEKS : | 44 |
| AVE_Q3 : | 76.0 |
| AVE_SOV: | 70.4 |
| NOTE 1 : | here ALL results obtained for sspro1 are given, i.e. NOT those for a common subset! |
| NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
| type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| sec | 2002_06_21 | dssp | psum | 75.9 | 81 | 82 | 63 | 72 | 77 | 72 | 70.3 | 74.5 | 68.3 | 66.8 | 2.5 | 0.35 | 0.35 | 0.35 | 0.70 | 0.60 | 0.56 | 8036.3 | 6.1 | 5.3 |
| sec | 2002_06_21 | dssp | sig | 10.0 | 28 | 28 | 34 | 38 | 13 | 12 | 15.4 | 23.6 | 27.6 | 16.5 | 3.5 | 0.16 | 0.16 | 0.16 | 0.22 | 0.25 | 0.17 | 7970.6 | 7.2 | 6.0 |
| sec | 2002_06_21 | dssp | errsig | 0.60 | 1 | 1 | 2 | 2 | 0.79 | 0.77 | 0.93 | 1.4 | 1.6 | 0.99 | 0.21 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 0.01 | 480.6 | 0.43 | 0.36 |
| Type | Method | Month | Nprot | Average Q3 for month | File with details for month |
|---|---|---|---|---|---|
| sec | sspro1 | ALL | 275 | 76.0 | |
| sec | sspro1 | 2000_05 | 13 | 74.5 | old/2000_05_sspro1.html |
| sec | sspro1 | 2000_06 | 10 | 76.4 | old/2000_06_sspro1.html |
| sec | sspro1 | 2000_07 | 28 | 76.6 | old/2000_07_sspro1.html |
| sec | sspro1 | 2000_08 | 18 | 79.3 | old/2000_08_sspro1.html |
| sec | sspro1 | 2000_09 | 24 | 76.9 | old/2000_09_sspro1.html |
| sec | sspro1 | 2000_10 | 33 | 74.7 | old/2000_10_sspro1.html |
| sec | sspro1 | 2000_11 | 33 | 73.9 | old/2000_11_sspro1.html |
| sec | sspro1 | 2000_12 | 38 | 77.1 | old/2000_12_sspro1.html |
| sec | sspro1 | 2001_01 | 24 | 79.0 | old/2001_01_sspro1.html |
| sec | sspro1 | 2001_02 | 28 | 75.3 | old/2001_02_sspro1.html |
| sec | sspro1 | 2001_03 | 28 | 74.1 | old/2001_03_sspro1.html |
| sec | sspro1 | 2001_04 | 9 | 73.9 | old/2001_04_sspro1.html |
| sec | sspro1 | ALL | 275 | 76.0 |
| psum | percentage over all proteins |
| sig | standard deviation |
| errsig | significant difference (to distinguish between two methods) |
| type | prediction type |
| date | date when added [yyyy_mm_dd] |
| sots | standard of truth |
| id | identifier of protein |
| Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
| Q3H%o | correctly predicted helix residues (percentage of helix observed) |
| Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
| Q3E%o | correctly predicted strand residues (percentage of helix observed) |
| Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
| Q3L%o | correctly predicted loop residues (percentage of helix observed) |
| Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
| sov | per segment accuracy (three states) |
| sovH | per segment accuracy for helix residues |
| sovE | per segment accuracy for strand residues |
| sovL | per segment accuracy for non-regular residues |
| BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
| infoO | information index accuracy (percentage of observed) |
| infoP | information index accuracy (percentage of predicted) |
| corrH | Matthews correlation index for helix |
| corrE | Matthews correlation index for strand |
| corrL | Matthews correlation index for loop |
| var | variance over all proteins (1/N-1)*( score(i) - |
| sig | sigma (standard deviation) over all proteins (sqrt[var]) |
| errsig | significant differences ( standard dev / sqrt(Nprot) ) |