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EVA sec results for: SSpro1 month: 2000_12

METHOD about:	../../../doc/explain_methods.html#PX_about_sspro1
METHOD url:	SSpro1
TYPE :	sec
NPROT :	275
NWEEKS :	44
NOTE 1 :	here ALL results obtained for SSpro1 in month 2000_12 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_12 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_12	dssp	ALL_proteins:psum	75.9	81	82	63	72	77	72	70.3	74.5	68.3	66.8	2.5	0.35	0.35	0.35	0.70	0.60	0.56	8036.3	6.1	5.3
sec	2000_12	dssp	ALL_proteins:sig	10.0	28	28	34	38	13	12	15.4	23.6	27.6	16.5	3.5	0.16	0.16	0.16	0.22	0.25	0.17	7970.6	7.2	6.0
sec	2000_12	dssp	ALL_proteins:errsig	0.60	1	1	2	2	0.79	0.77	0.93	1.4	1.6	0.99	0.21	0.01	0.01	0.01	0.01	0.01	0.01	480.6	0.43	0.36
sec	2000_12	dssp	THIS_month:psum	77.1	69	79	51	59	80	72	72.3	75.4	70.8	70.3	2.3	0.38	0.38	0.39	0.70	0.66	0.56	75.6	6.5	5.8

sec	2000_12	dssp	1ci6:A	96.4	96	100	0	0	100	60	99.1	100	100	83	0.0	0.60	0.71	0.49	0.75	1.0	0.75	100.0	3.0	0.00
sec	2000_12	dssp	1ci6:B	97.9	100	97	0	0	75	100	100.0	100	100	100	0.0	0.72	0.65	0.80	0.85	1.0	0.85	100.0	2.0	0.00
sec	2000_12	dssp	1d2t:A	67.2	52	88	0	0	84	62	52.1	42	100	64	1.4	0.16	0.18	0.15	0.47	1.0	0.40	0.0	21.0	5.0
sec	2000_12	dssp	1d7y:A	79.3	82	82	76	83	79	74	75.3	85	78	66	0.7	0.44	0.44	0.44	0.75	0.71	0.59	100.0	0.00	2.0
sec	2000_12	dssp	1dkc:A	75.7	0	0	30	100	100	72	57.3	100	38	67	0.0	0.27	0.19	0.37	1.0	0.47	0.47	100.0	0.00	24.0
sec	2000_12	dssp	1dl5:A	70.7	86	73	50	89	72	59	68.7	80	60	64	3.4	0.33	0.32	0.34	0.67	0.58	0.45	0.0	5.0	13.0
sec	2000_12	dssp	1dl9:A	61.3	65	38	46	31	61	83	48.5	55	43	47	2.4	0.09	0.10	0.08	0.29	0.33	0.28	100.0	16.0	2.0
sec	2000_12	dssp	1dmg:A	52.4	18	100	63	38	80	57	42.5	14	52	84	19.0	0.16	0.14	0.17	0.35	0.25	0.44	100.0	30.0	16.0
sec	2000_12	dssp	1e2x:A	86.9	89	95	60	100	84	62	72.8	74	70	64	0.0	0.46	0.48	0.46	0.71	0.76	0.64	100.0	4.0	1.0
sec	2000_12	dssp	1edz:A	71.0	81	75	51	73	70	66	66.3	92	50	53	1.2	0.29	0.29	0.31	0.63	0.54	0.43	100.0	3.0	5.0
sec	2000_12	dssp	1ekt:A	84.9	100	100	93	66	77	96	78.1	100	93	69	0.0	0.62	0.65	0.61	1.0	0.68	0.71	100.0	0.00	11.0
sec	2000_12	dssp	1eo1:A	91.1	88	92	100	81	88	95	100.0	100	100	100	0.0	0.70	0.71	0.69	0.87	0.87	0.82	100.0	0.00	4.0
sec	2000_12	dssp	1ewn:A	74.4	59	82	75	75	80	71	73.2	66	87	68	1.0	0.34	0.34	0.35	0.62	0.65	0.51	100.0	6.0	0.00
sec	2000_12	dssp	1f2d:A	79.2	77	86	76	75	82	74	79.5	82	80	76	1.7	0.40	0.40	0.40	0.68	0.71	0.61	100.0	4.0	0.00
sec	2000_12	dssp	1f53:A	69.0	0	0	53	70	78	80	67.7	100	54	75	5.9	0.15	0.18	0.13	1.0	0.42	0.47	100.0	10.0	9.0
sec	2000_12	dssp	1f5q:B	81.0	84	89	0	0	72	72	85.3	86	100	82	3.6	0.27	0.31	0.24	0.55	1.0	0.61	100.0	4.0	4.0
sec	2000_12	dssp	1f62:A	78.4	75	100	50	20	81	92	62.3	100	37	61	0.0	0.32	0.37	0.29	0.85	0.22	0.36	100.0	1.0	11.0
sec	2000_12	dssp	1f6d:A	86.4	89	92	84	80	83	81	88.6	94	83	83	0.7	0.55	0.55	0.55	0.82	0.78	0.72	100.0	1.0	0.00
sec	2000_12	dssp	1f7c:A	87.4	91	94	0	0	77	82	80.2	85	100	71	0.0	0.51	0.56	0.46	0.80	1.0	0.70	100.0	2.0	3.0
sec	2000_12	dssp	1fjn:A	53.8	0	0	0	0	100	53	11.2	0	0	20	0.0	0.00	0.00	0.00	1.0	1.0	0.00	100.0	25.0	20.0
sec	2000_12	dssp	1fou:A	69.3	75	67	59	53	67	75	60.4	52	61	69	3.0	0.21	0.22	0.21	0.52	0.49	0.45	100.0	4.0	1.0
sec	2000_12	dssp	1fpo:A	90.6	96	91	0	0	75	86	77.9	83	100	66	0.0	0.47	0.46	0.49	0.74	1.0	0.74	100.0	3.0	0.00
sec	2000_12	dssp	1fr3:A	71.6	30	100	78	81	78	55	76.8	40	89	71	4.4	0.26	0.24	0.28	0.51	0.54	0.49	0.0	10.0	1.0
sec	2000_12	dssp	1fu1:A	64.0	96	63	28	93	50	54	64.1	85	36	59	12.3	0.24	0.21	0.28	0.54	0.43	0.36	0.0	23.0	20.0
sec	2000_12	dssp	1fwk:A	82.4	92	88	71	89	79	72	86.5	98	75	83	0.0	0.54	0.54	0.55	0.84	0.73	0.62	100.0	2.0	5.0
sec	2000_12	dssp	1fx3:A	77.6	81	100	68	80	83	62	64.6	66	66	60	0.0	0.50	0.50	0.52	0.86	0.62	0.55	0.0	6.0	4.0
sec	2000_12	dssp	1fxk:B	97.2	100	98	80	100	93	88	99.5	100	100	96	0.0	0.86	0.85	0.88	0.97	0.88	0.89	100.0	0.00	1.0
sec	2000_12	dssp	1fxo:A	83.2	85	89	80	83	82	77	83.8	91	88	74	0.6	0.51	0.51	0.51	0.80	0.76	0.66	100.0	1.0	0.00
sec	2000_12	dssp	1fxx:A	84.6	80	84	70	80	94	86	91.0	85	85	97	6.4	0.51	0.51	0.52	0.73	0.68	0.82	0.0	1.0	2.0
sec	2000_12	dssp	1g6g:A	73.2	46	100	81	69	73	73	78.1	66	86	74	0.0	0.34	0.32	0.36	0.65	0.58	0.46	100.0	6.0	6.0
sec	2000_12	dssp	1g7t:A	85.3	100	86	75	85	76	83	85.8	100	75	78	0.0	0.61	0.61	0.62	0.88	0.74	0.68	100.0	5.0	2.0
sec	2000_12	dssp	1g8k:A	73.0	73	76	47	79	82	69	63.7	74	54	59	2.3	0.29	0.28	0.31	0.62	0.55	0.51	100.0	1.0	7.0
sec	2000_12	dssp	1g99:A	80.7	83	85	72	79	82	76	82.7	87	78	80	3.0	0.42	0.42	0.43	0.73	0.69	0.65	100.0	1.0	1.0
sec	2000_12	dssp	1ga6:A	58.5	30	94	43	65	91	51	43.2	34	47	47	3.2	0.19	0.16	0.22	0.45	0.40	0.36	0.0	21.0	9.0
sec	2000_12	dssp	1gak:A	73.0	73	91	0	0	75	61	61.4	65	0	54	8.0	0.21	0.25	0.18	0.50	-0.03	0.54	0.0	13.0	8.0
sec	2000_12	dssp	1gg4:A	78.9	81	82	78	74	77	78	81.8	91	72	79	1.0	0.42	0.43	0.42	0.73	0.69	0.59	0.0	0.00	1.0
sec	2000_12	dssp	1ggx:A	66.2	22	50	61	95	90	51	68.3	20	85	61	1.5	0.30	0.28	0.33	0.26	0.61	0.45	100.0	7.0	18.0

sec	2000_12	dssp	THIS_month:psum	77.1	69	79	51	59	80	72	72.3	75.4	70.8	70.3	2.3	0.38	0.38	0.39	0.70	0.66	0.56	75.6	6.5	5.8

sec	2000_12	dssp	ALL_proteins:psum	75.9	81	82	63	72	77	72	70.3	74.5	68.3	66.8	2.5	0.35	0.35	0.35	0.70	0.60	0.56	8036.3	6.1	5.3
sec	2000_12	dssp	ALL_proteins:sig	10.0	28	28	34	38	13	12	15.4	23.6	27.6	16.5	3.5	0.16	0.16	0.16	0.22	0.25	0.17	7970.6	7.2	6.0
sec	2000_12	dssp	ALL_proteins:errsig	0.60	1	1	2	2	0.79	0.77	0.93	1.4	1.6	0.99	0.21	0.01	0.01	0.01	0.01	0.01	0.01	480.6	0.43	0.36

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2000_12
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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