Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Bottom Explain scores

EVA sec results for: SSpro1 month: 2000_11

METHOD about:	../../../doc/explain_methods.html#PX_about_sspro1
METHOD url:	SSpro1
TYPE :	sec
NPROT :	275
NWEEKS :	44
NOTE 1 :	here ALL results obtained for SSpro1 in month 2000_11 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2000_11 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2000_11	dssp	ALL_proteins:psum	75.9	81	82	63	72	77	72	70.3	74.5	68.3	66.8	2.5	0.35	0.35	0.35	0.70	0.60	0.56	8036.3	6.1	5.3
sec	2000_11	dssp	ALL_proteins:sig	10.0	28	28	34	38	13	12	15.4	23.6	27.6	16.5	3.5	0.16	0.16	0.16	0.22	0.25	0.17	7970.6	7.2	6.0
sec	2000_11	dssp	ALL_proteins:errsig	0.60	1	1	2	2	0.79	0.77	0.93	1.4	1.6	0.99	0.21	0.01	0.01	0.01	0.01	0.01	0.01	480.6	0.43	0.36
sec	2000_11	dssp	THIS_month:psum	73.9	70	66	45	52	71	74	68.0	75.3	68.4	63.3	2.6	0.32	0.32	0.33	0.63	0.62	0.50	84.3	8.8	4.6

sec	2000_11	dssp	1by6:A	36.1	66	16	0	0	30	81	20.1	16	100	20	0.0	0.00	0.00	0.00	-0.02	1.0	-0.02	100.0	52.0	0.00
sec	2000_11	dssp	1c0p:A	76.6	83	80	63	81	80	72	71.5	85	71	63	1.9	0.38	0.38	0.39	0.73	0.62	0.56	100.0	1.0	6.0
sec	2000_11	dssp	1dfc:A	65.1	9	3	67	76	67	70	67.3	10	71	69	3.5	0.17	0.18	0.16	-0.01	0.52	0.37	100.0	7.0	4.0
sec	2000_11	dssp	1dh3:A	94.5	97	95	0	0	71	83	99.1	100	100	92	0.0	0.49	0.47	0.52	0.74	1.0	0.74	100.0	1.0	0.00
sec	2000_11	dssp	1dpu:A	84.1	93	90	44	80	85	77	87.2	100	44	86	0.0	0.53	0.51	0.56	0.85	0.55	0.67	100.0	1.0	5.0
sec	2000_11	dssp	1e0f:I	75.4	0	0	0	0	89	82	24.7	100	0	28	0.0	0.04	0.04	0.05	1.0	-0.13	-0.13	100.0	0.00	7.0
sec	2000_11	dssp	1e5d:A	86.3	91	92	76	89	87	78	87.4	90	84	86	0.7	0.58	0.58	0.58	0.86	0.77	0.72	100.0	0.00	3.0
sec	2000_11	dssp	1e5k:A	83.0	93	80	70	87	81	83	86.2	95	82	82	1.0	0.50	0.50	0.51	0.79	0.73	0.67	0.0	5.0	4.0
sec	2000_11	dssp	1e79:I	59.6	100	46	100	50	36	100	40.0	100	66	24	0.0	0.34	0.36	0.33	0.49	0.68	0.41	100.0	34.0	6.0
sec	2000_11	dssp	1e96:B	75.0	85	80	50	25	54	72	63.4	69	50	52	4.3	0.19	0.20	0.19	0.47	0.32	0.49	0.0	4.0	3.0
sec	2000_11	dssp	1ehx:A	76.6	41	83	64	88	93	71	76.7	62	70	84	1.0	0.36	0.33	0.40	0.55	0.64	0.58	100.0	6.0	9.0
sec	2000_11	dssp	1ev0:A	58.6	33	63	83	57	63	57	50.0	27	100	46	13.7	0.19	0.19	0.20	0.27	0.51	0.39	100.0	17.0	13.0
sec	2000_11	dssp	1f2n:A	64.0	39	57	48	66	82	63	54.2	36	57	56	3.7	0.13	0.13	0.15	0.40	0.38	0.36	100.0	4.0	9.0
sec	2000_11	dssp	1f5m:A	74.4	73	90	67	64	80	68	72.4	75	78	66	4.5	0.36	0.36	0.36	0.72	0.54	0.56	100.0	7.0	1.0
sec	2000_11	dssp	1faf:A	86.1	93	85	0	0	73	88	80.9	93	100	64	0.0	0.40	0.39	0.42	0.70	1.0	0.70	100.0	6.0	0.00
sec	2000_11	dssp	1fd3:A	68.3	0	0	46	66	100	68	56.3	0	53	73	7.3	0.30	0.21	0.39	1.0	0.39	0.57	100.0	14.0	9.0
sec	2000_11	dssp	1fi2:A	78.1	73	71	80	77	78	80	68.8	76	74	64	0.4	0.38	0.39	0.39	0.66	0.69	0.57	100.0	0.00	0.00
sec	2000_11	dssp	1fp3:A	70.4	77	85	20	30	72	57	65.8	76	11	58	3.2	0.21	0.21	0.22	0.58	0.18	0.44	100.0	5.0	3.0
sec	2000_11	dssp	1fs1:A	80.5	88	82	0	0	66	76	64.4	66	100	61	0.0	0.25	0.25	0.26	0.57	1.0	0.57	100.0	4.0	0.00
sec	2000_11	dssp	1fsi:A	64.9	94	63	41	94	62	54	59.6	94	35	65	5.4	0.31	0.30	0.33	0.64	0.52	0.35	0.0	15.0	19.0
sec	2000_11	dssp	1fuk:A	78.3	91	76	82	74	64	83	78.9	91	92	63	1.9	0.45	0.45	0.45	0.73	0.71	0.58	100.0	7.0	2.0
sec	2000_11	dssp	1fvi:A	66.3	90	62	22	71	76	68	63.5	100	30	61	4.6	0.26	0.24	0.28	0.65	0.31	0.42	100.0	11.0	17.0
sec	2000_11	dssp	1fx8:A	84.3	82	98	0	0	90	67	79.9	79	100	81	2.3	0.41	0.48	0.35	0.69	1.0	0.69	100.0	12.0	3.0
sec	2000_11	dssp	1fy7:A	75.1	90	83	60	70	70	69	65.6	91	67	47	1.0	0.40	0.40	0.41	0.79	0.54	0.50	100.0	2.0	3.0
sec	2000_11	dssp	1fyx:A	61.7	67	66	69	76	51	50	61.6	65	80	49	0.0	0.25	0.26	0.26	0.39	0.68	0.19	100.0	0.00	1.0
sec	2000_11	dssp	1g1p:A	59.4	0	0	42	60	64	84	45.0	100	20	50	3.1	0.09	0.13	0.07	1.0	0.39	0.17	100.0	25.0	6.0
sec	2000_11	dssp	1g25:A	73.8	69	42	37	75	81	90	76.6	69	37	85	7.6	0.31	0.31	0.32	0.39	0.48	0.60	100.0	12.0	6.0
sec	2000_11	dssp	1g2i:A	80.7	72	96	83	79	87	70	79.5	77	83	79	2.4	0.47	0.48	0.48	0.75	0.74	0.65	0.0	9.0	1.0
sec	2000_11	dssp	1g5t:A	82.2	90	78	71	80	78	87	87.3	95	76	84	4.4	0.47	0.47	0.48	0.72	0.70	0.72	100.0	6.0	1.0
sec	2000_11	dssp	1g61:A	70.7	76	86	74	55	63	74	64.1	75	58	57	6.6	0.31	0.32	0.32	0.72	0.47	0.51	0.0	3.0	9.0
sec	2000_11	dssp	1g7d:A	83.0	95	81	0	0	59	88	81.6	100	100	55	0.0	0.32	0.30	0.35	0.61	1.0	0.61	100.0	11.0	0.00
sec	2000_11	dssp	1qoj:A	93.3	97	94	0	0	71	83	96.7	100	100	78	0.0	0.47	0.46	0.50	0.73	1.0	0.73	100.0	2.0	0.00

sec	2000_11	dssp	THIS_month:psum	73.9	70	66	45	52	71	74	68.0	75.3	68.4	63.3	2.6	0.32	0.32	0.33	0.63	0.62	0.50	84.3	8.8	4.6

sec	2000_11	dssp	ALL_proteins:psum	75.9	81	82	63	72	77	72	70.3	74.5	68.3	66.8	2.5	0.35	0.35	0.35	0.70	0.60	0.56	8036.3	6.1	5.3
sec	2000_11	dssp	ALL_proteins:sig	10.0	28	28	34	38	13	12	15.4	23.6	27.6	16.5	3.5	0.16	0.16	0.16	0.22	0.25	0.17	7970.6	7.2	6.0
sec	2000_11	dssp	ALL_proteins:errsig	0.60	1	1	2	2	0.79	0.77	0.93	1.4	1.6	0.99	0.21	0.01	0.01	0.01	0.01	0.01	0.01	480.6	0.43	0.36

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2000_11
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

Explain scores - Home - Secondary structure Comparative modelling Contacts Threading - search - FTP - Mirrors - Top