METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_05 | dssp | THIS_month:psum | 73.4 | 67 | 70 | 45 | 52 | 72 | 70 | 68.1 | 68.4 | 73.9 | 65.5 | 2.2 | 0.31 | 0.31 | 0.31 | 0.55 | 0.67 | 0.48 | 73.6 | 6.3 | 5.5 |
sec | 2002_05 | dssp | 1cix:A | 72.7 | 0 | 0 | 18 | 40 | 90 | 76 | 70.6 | 100 | 18 | 88 | 0.0 | 0.01 | 0.01 | 0.02 | 1.0 | 0.12 | 0.12 | 100.0 | 0.00 | 13.0 |
sec | 2002_05 | dssp | 1go4:G | 86.0 | 88 | 92 | 62 | 100 | 85 | 66 | 94.6 | 100 | 75 | 83 | 2.0 | 0.46 | 0.46 | 0.47 | 0.69 | 0.77 | 0.68 | 100.0 | 2.0 | 3.0 |
sec | 2002_05 | dssp | 1hxv:A | 74.1 | 55 | 50 | 80 | 73 | 73 | 80 | 68.9 | 80 | 86 | 57 | 2.3 | 0.29 | 0.30 | 0.29 | 0.46 | 0.62 | 0.53 | 100.0 | 1.0 | 3.0 |
sec | 2002_05 | dssp | 1i36:A | 84.0 | 91 | 89 | 80 | 82 | 70 | 72 | 84.4 | 88 | 94 | 71 | 0.0 | 0.50 | 0.51 | 0.51 | 0.77 | 0.78 | 0.59 | 100.0 | 1.0 | 0.00 |
sec | 2002_05 | dssp | 1iko:P | 75.9 | 7 | 50 | 86 | 67 | 82 | 82 | 70.2 | 7 | 85 | 72 | 2.8 | 0.27 | 0.25 | 0.30 | 0.16 | 0.63 | 0.55 | 100.0 | 8.0 | 8.0 |
sec | 2002_05 | dssp | 1ir6:A | 82.9 | 93 | 83 | 66 | 85 | 73 | 81 | 80.4 | 89 | 71 | 71 | 0.5 | 0.47 | 0.46 | 0.49 | 0.75 | 0.72 | 0.64 | 100.0 | 6.0 | 2.0 |
sec | 2002_05 | dssp | 1jjv:A | 89.7 | 100 | 86 | 88 | 88 | 78 | 94 | 98.3 | 100 | 100 | 95 | 0.0 | 0.68 | 0.68 | 0.69 | 0.87 | 0.86 | 0.78 | 100.0 | 6.0 | 0.00 |
sec | 2002_05 | dssp | 1jni:A | 66.1 | 35 | 62 | 50 | 18 | 77 | 79 | 73.5 | 41 | 50 | 85 | 3.2 | 0.09 | 0.10 | 0.09 | 0.36 | 0.22 | 0.26 | 100.0 | 9.0 | 11.0 |
sec | 2002_05 | dssp | 1jsx:A | 94.3 | 100 | 92 | 0 | 0 | 77 | 100 | 97.1 | 100 | 100 | 88 | 0.0 | 0.68 | 0.64 | 0.73 | 0.84 | 1.0 | 0.84 | 100.0 | 5.0 | 0.00 |
sec | 2002_05 | dssp | 1juh:B | 75.3 | 60 | 85 | 65 | 81 | 85 | 70 | 77.7 | 60 | 79 | 78 | 0.0 | 0.30 | 0.29 | 0.32 | 0.70 | 0.56 | 0.51 | 100.0 | 1.0 | 8.0 |
sec | 2002_05 | dssp | 1k3r:B | 79.9 | 86 | 70 | 78 | 85 | 76 | 84 | 81.5 | 81 | 87 | 78 | 1.5 | 0.44 | 0.44 | 0.44 | 0.68 | 0.77 | 0.63 | 0.0 | 6.0 | 1.0 |
sec | 2002_05 | dssp | 1k45:A | 69.6 | 16 | 20 | 65 | 75 | 77 | 68 | 65.2 | 16 | 66 | 67 | 1.1 | 0.16 | 0.16 | 0.17 | 0.15 | 0.47 | 0.42 | 0.0 | 0.00 | 5.0 |
sec | 2002_05 | dssp | 1kjy:B | 54.3 | 64 | 52 | 0 | 0 | 44 | 57 | 49.8 | 62 | 100 | 40 | 0.0 | 0.00 | 0.01 | 0.01 | 0.09 | 1.0 | 0.09 | 100.0 | 11.0 | 0.00 |
sec | 2002_05 | dssp | 1kpp:A | 69.4 | 84 | 78 | 43 | 52 | 72 | 70 | 66.2 | 93 | 39 | 64 | 0.0 | 0.32 | 0.32 | 0.33 | 0.73 | 0.35 | 0.38 | 100.0 | 2.0 | 3.0 |
sec | 2002_05 | dssp | 1kr7:A | 83.6 | 86 | 93 | 0 | 0 | 76 | 71 | 92.5 | 93 | 100 | 89 | 1.8 | 0.33 | 0.38 | 0.30 | 0.66 | 1.0 | 0.64 | 100.0 | 5.0 | 3.0 |
sec | 2002_05 | dssp | 1ksh:B | 70.0 | 81 | 65 | 57 | 97 | 90 | 52 | 71.5 | 100 | 65 | 70 | 4.5 | 0.36 | 0.37 | 0.35 | 0.67 | 0.57 | 0.52 | 100.0 | 3.0 | 23.0 |
sec | 2002_05 | dssp | 1ktg:A | 76.6 | 95 | 80 | 53 | 100 | 94 | 60 | 71.5 | 100 | 57 | 69 | 5.1 | 0.50 | 0.50 | 0.50 | 0.82 | 0.62 | 0.64 | 0.0 | 5.0 | 20.0 |
sec | 2002_05 | dssp | 1kuu:A | 79.2 | 78 | 80 | 79 | 87 | 79 | 72 | 77.5 | 59 | 86 | 77 | 0.0 | 0.45 | 0.45 | 0.46 | 0.73 | 0.73 | 0.57 | 100.0 | 0.00 | 3.0 |
sec | 2002_05 | dssp | 1kv4:A | 95.2 | 93 | 100 | 0 | 0 | 100 | 92 | 52.0 | 45 | 100 | 100 | 2.3 | 0.78 | 0.86 | 0.71 | 0.89 | 1.0 | 0.94 | 100.0 | 4.0 | 2.0 |
sec | 2002_05 | dssp | 1kyq:B | 70.3 | 85 | 66 | 56 | 87 | 59 | 71 | 67.9 | 72 | 60 | 65 | 4.7 | 0.27 | 0.26 | 0.29 | 0.51 | 0.65 | 0.46 | 100.0 | 12.0 | 6.0 |
sec | 2002_05 | dssp | 1l1d:B | 69.4 | 56 | 88 | 50 | 71 | 88 | 63 | 52.2 | 59 | 47 | 51 | 2.0 | 0.28 | 0.26 | 0.30 | 0.63 | 0.48 | 0.46 | 100.0 | 9.0 | 8.0 |
sec | 2002_05 | dssp | 1l1s:A | 78.4 | 84 | 80 | 74 | 90 | 71 | 67 | 86.5 | 100 | 81 | 68 | 3.6 | 0.40 | 0.40 | 0.41 | 0.65 | 0.77 | 0.56 | 0.0 | 2.0 | 4.0 |
sec | 2002_05 | dssp | 1ldj:A | 83.6 | 97 | 83 | 0 | 0 | 42 | 85 | 68.9 | 74 | 100 | 53 | 0.0 | 0.26 | 0.21 | 0.32 | 0.52 | 1.0 | 0.52 | 100.0 | 12.0 | 0.00 |
sec | 2002_05 | dssp | 1ldj:B | 64.8 | 100 | 39 | 65 | 61 | 57 | 84 | 55.0 | 94 | 50 | 51 | 1.1 | 0.28 | 0.31 | 0.26 | 0.55 | 0.52 | 0.37 | 0.0 | 19.0 | 1.0 |
sec | 2002_05 | dssp | 1ldv:A | 52.7 | 18 | 17 | 13 | 42 | 77 | 60 | 13.3 | 6 | 4 | 17 | 3.7 | 0.02 | 0.02 | 0.02 | 0.03 | 0.11 | 0.02 | 100.0 | 0.00 | 17.0 |
sec | 2002_05 | dssp | 1lgj:A | 60.1 | 60 | 75 | 0 | 0 | 59 | 52 | 47.5 | 49 | 100 | 43 | 5.3 | 0.05 | 0.06 | 0.04 | 0.25 | 1.0 | 0.27 | 0.0 | 12.0 | 7.0 |
sec | 2002_05 | dssp | 1lgo:A | 65.2 | 66 | 93 | 0 | 0 | 62 | 57 | 63.3 | 69 | 100 | 51 | 6.4 | 0.21 | 0.26 | 0.16 | 0.54 | 1.0 | 0.38 | 0.0 | 18.0 | 16.0 |
sec | 2002_05 | dssp | 1lgz:A | 70.7 | 72 | 75 | 0 | 0 | 68 | 64 | 57.5 | 55 | 100 | 60 | 0.0 | 0.12 | 0.12 | 0.12 | 0.40 | 1.0 | 0.40 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1lh8:A | 60.3 | 61 | 83 | 0 | 0 | 56 | 29 | 57.5 | 68 | 100 | 20 | 0.0 | 0.01 | 0.02 | 0.01 | 0.14 | 1.0 | 0.14 | 100.0 | 20.0 | 0.00 |
sec | 2002_05 | dssp | 1li1:A | 68.4 | 8 | 13 | 58 | 92 | 91 | 64 | 65.3 | 9 | 66 | 80 | 3.9 | 0.25 | 0.23 | 0.28 | 0.02 | 0.60 | 0.49 | 100.0 | 3.0 | 16.0 |
sec | 2002_05 | dssp | 1li5:A | 82.9 | 87 | 96 | 68 | 75 | 85 | 73 | 83.1 | 91 | 75 | 77 | 0.0 | 0.54 | 0.54 | 0.55 | 0.87 | 0.65 | 0.65 | 100.0 | 3.0 | 1.0 |
sec | 2002_05 | dssp | 1lja:A | 77.1 | 87 | 81 | 0 | 0 | 51 | 63 | 57.9 | 62 | 100 | 45 | 0.0 | 0.14 | 0.14 | 0.15 | 0.41 | 1.0 | 0.41 | 100.0 | 5.0 | 0.00 |
sec | 2002_05 | dssp | 1lk8:A | 40.2 | 38 | 33 | 35 | 24 | 42 | 57 | 37.8 | 46 | 32 | 35 | 14.0 | 0.00 | 0.01 | 0.01 | 0.03 | 0.10 | 0.09 | 0.0 | 5.0 | 7.0 |
sec | 2002_05 | dssp | 1ll3:A | 63.9 | 58 | 74 | 59 | 54 | 71 | 60 | 62.3 | 65 | 64 | 58 | 6.8 | 0.18 | 0.18 | 0.18 | 0.47 | 0.45 | 0.40 | 0.0 | 8.0 | 1.0 |
sec | 2002_05 | dssp | 1ln4:A | 89.8 | 95 | 100 | 95 | 73 | 81 | 91 | 83.4 | 100 | 78 | 72 | 0.0 | 0.72 | 0.74 | 0.72 | 0.95 | 0.78 | 0.78 | 0.0 | 2.0 | 6.0 |
sec | 2002_05 | dssp | 1lpl:A | 81.1 | 45 | 100 | 83 | 76 | 86 | 82 | 82.8 | 63 | 89 | 83 | 1.0 | 0.41 | 0.39 | 0.44 | 0.65 | 0.69 | 0.63 | 100.0 | 6.0 | 3.0 |
sec | 2002_05 | dssp | 1lr0:A | 73.0 | 61 | 89 | 86 | 95 | 87 | 50 | 54.1 | 41 | 95 | 79 | 1.5 | 0.45 | 0.46 | 0.44 | 0.53 | 0.89 | 0.51 | 100.0 | 17.0 | 1.0 |
sec | 2002_05 | dssp | 1lu7:A | 59.9 | 88 | 66 | 29 | 16 | 42 | 75 | 49.1 | 64 | 12 | 41 | 5.1 | 0.19 | 0.20 | 0.19 | 0.55 | 0.10 | 0.32 | 100.0 | 13.0 | 7.0 |
sec | 2002_05 | dssp | THIS_month:psum | 73.4 | 67 | 70 | 45 | 52 | 72 | 70 | 68.1 | 68.4 | 73.9 | 65.5 | 2.2 | 0.31 | 0.31 | 0.31 | 0.55 | 0.67 | 0.48 | 73.6 | 6.3 | 5.5 |
sec | 2002_05 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |