| method | prediction | diff_Q3 | diff_sov | diff_info |
| | ....,....1....,....2....,....3....,....4.. |
| seq | AKIPIKAIKTVGKAVGKGLRAINIASTANDVFNFLKPKKRKA | | | |
| dssp | ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------- | | | |
| apssp | ----EEEEEE---------EEEEE------HH---------- | -43.2 | -36.2 | -0.20 |
| apssp2 | ----HHHHHHHHHHHH----EEEE---HHHHHHHH------- | -12.0 | -22.7 | -0.23 |
| jpred | ----HHHHHHHHHHH-----EEEE------------------ | -19.1 | -8.9 | -0.11 |
| phd | -----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------- | +22.2 | +7.2 | +0.32 |
| phdpsi | -----HHHHHHHHHHHH-HHHHHHHHHHHHHHHHH------- | +18.6 | +4 | +0.26 |
| prof_king | ----HHHHHHHHHHH----EEEEE---HHHHHHH-------- | -3.2 | -17.6 | +0.06 |
| profsec | ----HHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHH--- | +9.1 | -10.0 | -0.03 |
| psipred | ----HHHHHHHHHHHH---EEEEE---HHHHHHHH------- | -6.5 | -18.1 | -0.08 |
| samt99_sec | ----HHHHHHHHHHH----HEEEE---HHHHHHH-------- | -1.5 | -32.4 | +0.05 |
| sspro2 | ----HHHHHHH-HHHHHHHHHEHHHHHHHHHHHH-------- | +18.2 | -20.1 | +0.40 |