METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 103 |
NWEEKS : | 20 |
NOTE 1 : | here ALL results obtained for Prospect in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_05 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
sec | 2002_05 | dssp | THIS_month:psum | 72.0 | 68 | 73 | 48 | 50 | 70 | 67 | 68.2 | 67.1 | 76.6 | 64.5 | 1.7 | 0.29 | 0.29 | 0.30 | 0.51 | 0.67 | 0.44 | 85.1 | 6.1 | 5.4 |
sec | 2002_05 | dssp | 1go4:G | 82.0 | 84 | 93 | 50 | 66 | 85 | 60 | 53.9 | 48 | 75 | 85 | 3.0 | 0.36 | 0.38 | 0.36 | 0.66 | 0.54 | 0.62 | 100.0 | 6.0 | 2.0 |
sec | 2002_05 | dssp | 1hxv:A | 75.3 | 44 | 44 | 87 | 79 | 73 | 78 | 80.7 | 57 | 89 | 79 | 0.0 | 0.35 | 0.36 | 0.35 | 0.37 | 0.72 | 0.50 | 100.0 | 0.00 | 3.0 |
sec | 2002_05 | dssp | 1i36:A | 83.2 | 91 | 91 | 88 | 72 | 64 | 72 | 83.5 | 88 | 90 | 69 | 0.0 | 0.51 | 0.51 | 0.51 | 0.78 | 0.76 | 0.57 | 100.0 | 0.00 | 3.0 |
sec | 2002_05 | dssp | 1ir6:A | 78.2 | 84 | 81 | 68 | 64 | 72 | 77 | 79.9 | 87 | 72 | 73 | 3.1 | 0.35 | 0.35 | 0.35 | 0.66 | 0.62 | 0.60 | 100.0 | 1.0 | 0.00 |
sec | 2002_05 | dssp | 1jni:A | 66.1 | 21 | 75 | 50 | 22 | 81 | 73 | 67.2 | 28 | 37 | 82 | 0.0 | 0.13 | 0.13 | 0.15 | 0.32 | 0.26 | 0.10 | 100.0 | 16.0 | 8.0 |
sec | 2002_05 | dssp | 1jsx:A | 82.9 | 100 | 86 | 0 | 0 | 33 | 100 | 71.4 | 100 | 100 | 25 | 0.0 | 0.43 | 0.41 | 0.46 | 0.69 | 1.0 | 0.52 | 100.0 | 11.0 | 5.0 |
sec | 2002_05 | dssp | 1juh:B | 74.0 | 50 | 71 | 56 | 90 | 92 | 67 | 75.1 | 60 | 74 | 77 | 0.0 | 0.30 | 0.28 | 0.33 | 0.57 | 0.58 | 0.51 | 100.0 | 1.0 | 16.0 |
sec | 2002_05 | dssp | 1k3r:B | 79.5 | 82 | 71 | 77 | 85 | 79 | 82 | 80.7 | 87 | 83 | 76 | 1.8 | 0.42 | 0.42 | 0.42 | 0.66 | 0.75 | 0.62 | 100.0 | 4.0 | 2.0 |
sec | 2002_05 | dssp | 1k45:A | 64.3 | 50 | 12 | 54 | 82 | 74 | 68 | 67.5 | 33 | 64 | 72 | 5.9 | 0.15 | 0.17 | 0.14 | 0.18 | 0.47 | 0.40 | 0.0 | 11.0 | 16.0 |
sec | 2002_05 | dssp | 1kjy:B | 51.4 | 58 | 55 | 0 | 0 | 44 | 53 | 51.1 | 55 | 100 | 46 | 0.0 | 0.05 | 0.06 | 0.05 | 0.14 | 1.0 | 0.03 | 100.0 | 2.0 | 5.0 |
sec | 2002_05 | dssp | 1kpp:A | 71.5 | 86 | 80 | 60 | 52 | 68 | 75 | 71.3 | 98 | 57 | 64 | 0.0 | 0.36 | 0.37 | 0.35 | 0.77 | 0.43 | 0.43 | 100.0 | 2.0 | 2.0 |
sec | 2002_05 | dssp | 1kr7:A | 87.3 | 88 | 93 | 0 | 0 | 83 | 73 | 87.4 | 90 | 100 | 78 | 0.0 | 0.39 | 0.41 | 0.39 | 0.69 | 1.0 | 0.69 | 100.0 | 3.0 | 0.00 |
sec | 2002_05 | dssp | 1ktg:A | 78.8 | 87 | 97 | 61 | 94 | 97 | 58 | 76.1 | 92 | 65 | 79 | 1.4 | 0.56 | 0.56 | 0.57 | 0.89 | 0.64 | 0.63 | 100.0 | 2.0 | 15.0 |
sec | 2002_05 | dssp | 1kuu:A | 77.7 | 73 | 83 | 69 | 90 | 87 | 68 | 83.1 | 82 | 85 | 81 | 0.9 | 0.41 | 0.41 | 0.43 | 0.72 | 0.68 | 0.59 | 100.0 | 2.0 | 8.0 |
sec | 2002_05 | dssp | 1kv4:A | 71.4 | 73 | 84 | 0 | 0 | 66 | 50 | 40.7 | 37 | 100 | 66 | 0.0 | 0.10 | 0.11 | 0.10 | 0.37 | 1.0 | 0.37 | 100.0 | 9.0 | 0.00 |
sec | 2002_05 | dssp | 1l1s:A | 79.3 | 69 | 92 | 88 | 75 | 87 | 70 | 82.0 | 75 | 93 | 84 | 6.3 | 0.44 | 0.45 | 0.43 | 0.67 | 0.75 | 0.68 | 100.0 | 11.0 | 4.0 |
sec | 2002_05 | dssp | 1ldj:A | 78.2 | 87 | 83 | 0 | 0 | 50 | 58 | 87.2 | 100 | 100 | 49 | 0.0 | 0.13 | 0.13 | 0.14 | 0.39 | 1.0 | 0.39 | 100.0 | 3.0 | 0.00 |
sec | 2002_05 | dssp | 1ldj:B | 71.6 | 100 | 64 | 65 | 52 | 68 | 84 | 61.6 | 94 | 71 | 54 | 0.0 | 0.35 | 0.38 | 0.33 | 0.77 | 0.44 | 0.43 | 100.0 | 6.0 | 5.0 |
sec | 2002_05 | dssp | 1lh8:A | 65.8 | 61 | 92 | 0 | 0 | 81 | 37 | 75.6 | 81 | 100 | 56 | 0.0 | 0.11 | 0.12 | 0.10 | 0.35 | 1.0 | 0.35 | 100.0 | 26.0 | 0.00 |
sec | 2002_05 | dssp | 1li1:A | 62.3 | 0 | 0 | 50 | 89 | 87 | 58 | 54.1 | 0 | 52 | 67 | 3.9 | 0.19 | 0.18 | 0.22 | -0.09 | 0.52 | 0.38 | 100.0 | 3.0 | 19.0 |
sec | 2002_05 | dssp | 1lja:A | 66.0 | 74 | 76 | 0 | 0 | 46 | 42 | 54.3 | 59 | 100 | 39 | 0.0 | 0.03 | 0.03 | 0.03 | 0.20 | 1.0 | 0.20 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1lk8:A | 43.1 | 38 | 33 | 31 | 26 | 49 | 59 | 36.8 | 40 | 29 | 36 | 13.7 | 0.01 | 0.01 | 0.01 | 0.04 | 0.11 | 0.14 | 0.0 | 4.0 | 3.0 |
sec | 2002_05 | dssp | 1ll3:A | 71.7 | 72 | 78 | 74 | 74 | 69 | 64 | 71.2 | 78 | 68 | 64 | 1.2 | 0.31 | 0.32 | 0.32 | 0.59 | 0.68 | 0.44 | 100.0 | 3.0 | 0.00 |
sec | 2002_05 | dssp | 1ln4:A | 86.7 | 100 | 93 | 90 | 66 | 71 | 96 | 83.4 | 100 | 93 | 66 | 1.0 | 0.66 | 0.67 | 0.66 | 0.93 | 0.70 | 0.74 | 0.0 | 3.0 | 7.0 |
sec | 2002_05 | dssp | 1lpl:A | 75.8 | 36 | 100 | 83 | 70 | 79 | 77 | 81.2 | 54 | 87 | 83 | 0.0 | 0.36 | 0.34 | 0.39 | 0.57 | 0.64 | 0.50 | 100.0 | 7.0 | 6.0 |
sec | 2002_05 | dssp | 1lr0:A | 65.9 | 60 | 80 | 69 | 100 | 75 | 43 | 47.1 | 41 | 62 | 59 | 1.5 | 0.32 | 0.32 | 0.33 | 0.42 | 0.80 | 0.35 | 100.0 | 14.0 | 5.0 |
sec | 2002_05 | dssp | 1lu7:A | 55.5 | 88 | 66 | 37 | 16 | 31 | 67 | 39.2 | 48 | 23 | 34 | 3.6 | 0.19 | 0.20 | 0.19 | 0.55 | 0.11 | 0.20 | 0.0 | 13.0 | 12.0 |
sec | 2002_05 | dssp | THIS_month:psum | 72.0 | 68 | 73 | 48 | 50 | 70 | 67 | 68.2 | 67.1 | 76.6 | 64.5 | 1.7 | 0.29 | 0.29 | 0.30 | 0.51 | 0.67 | 0.44 | 85.1 | 6.1 | 5.4 |
sec | 2002_05 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_05 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |