METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2002_05 | dssp | THIS_month:psum | 70.7 | 63 | 70 | 44 | 45 | 68 | 68 | 64.5 | 63.1 | 72.0 | 62.0 | 2.8 | 0.26 | 0.25 | 0.27 | 0.52 | 0.66 | 0.43 | 78.3 | 8.7 | 6 |
sec | 2002_05 | dssp | 1cix:A | 68.2 | 0 | 0 | 27 | 33 | 81 | 77 | 49.2 | 100 | 36 | 51 | 0.0 | 0.00 | 0.01 | 0.01 | 1.0 | 0.09 | 0.09 | 100.0 | 0.00 | 4.0 |
sec | 2002_05 | dssp | 1go4:G | 75.0 | 98 | 74 | 0 | 0 | 23 | 83 | 46.3 | 56 | 0 | 28 | 8.0 | 0.16 | 0.08 | 0.26 | 0.30 | 1.0 | 0.38 | 0.0 | 23.0 | 8.0 |
sec | 2002_05 | dssp | 1hxv:A | 75.3 | 66 | 75 | 80 | 71 | 73 | 78 | 81.7 | 66 | 89 | 79 | 0.0 | 0.33 | 0.34 | 0.34 | 0.67 | 0.60 | 0.50 | 100.0 | 1.0 | 4.0 |
sec | 2002_05 | dssp | 1i36:A | 75.2 | 78 | 91 | 65 | 69 | 72 | 55 | 83.0 | 92 | 72 | 68 | 0.8 | 0.35 | 0.36 | 0.35 | 0.67 | 0.62 | 0.46 | 100.0 | 7.0 | 0.00 |
sec | 2002_05 | dssp | 1iko:P | 69.5 | 21 | 100 | 83 | 55 | 70 | 80 | 61.0 | 21 | 73 | 61 | 2.8 | 0.21 | 0.20 | 0.23 | 0.44 | 0.49 | 0.44 | 0.0 | 7.0 | 15.0 |
sec | 2002_05 | dssp | 1ir6:A | 80.3 | 88 | 83 | 64 | 64 | 74 | 80 | 86.5 | 92 | 68 | 84 | 2.8 | 0.38 | 0.38 | 0.39 | 0.71 | 0.59 | 0.64 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1jjv:A | 79.3 | 92 | 75 | 88 | 80 | 60 | 87 | 83.6 | 92 | 93 | 69 | 1.7 | 0.46 | 0.46 | 0.47 | 0.67 | 0.81 | 0.60 | 100.0 | 10.0 | 1.0 |
sec | 2002_05 | dssp | 1jni:A | 53.2 | 0 | 0 | 25 | 5 | 72 | 76 | 53.0 | 0 | 33 | 71 | 11.2 | 0.02 | 0.03 | 0.03 | 1.0 | -0.04 | 0.16 | 100.0 | 22.0 | 25.0 |
sec | 2002_05 | dssp | 1jsx:A | 91.4 | 100 | 89 | 0 | 0 | 66 | 100 | 97.1 | 100 | 100 | 88 | 0.0 | 0.57 | 0.52 | 0.64 | 0.77 | 1.0 | 0.77 | 100.0 | 8.0 | 0.00 |
sec | 2002_05 | dssp | 1juh:B | 79.2 | 30 | 100 | 82 | 80 | 83 | 77 | 78.5 | 40 | 78 | 83 | 0.0 | 0.36 | 0.34 | 0.39 | 0.53 | 0.67 | 0.58 | 100.0 | 4.0 | 0.00 |
sec | 2002_05 | dssp | 1k3r:B | 76.9 | 65 | 75 | 86 | 76 | 78 | 77 | 75.1 | 74 | 89 | 69 | 1.5 | 0.38 | 0.38 | 0.38 | 0.59 | 0.75 | 0.56 | 100.0 | 3.0 | 3.0 |
sec | 2002_05 | dssp | 1k45:A | 78.6 | 50 | 42 | 86 | 76 | 73 | 84 | 66.9 | 28 | 78 | 59 | 1.7 | 0.30 | 0.30 | 0.30 | 0.44 | 0.62 | 0.61 | 100.0 | 0.00 | 5.0 |
sec | 2002_05 | dssp | 1kjy:B | 57.1 | 58 | 55 | 0 | 0 | 55 | 58 | 50.4 | 58 | 100 | 42 | 0.0 | 0.01 | 0.01 | 0.01 | 0.14 | 1.0 | 0.14 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1kpp:A | 73.6 | 84 | 78 | 56 | 58 | 75 | 77 | 72.2 | 98 | 37 | 72 | 1.3 | 0.34 | 0.34 | 0.34 | 0.73 | 0.46 | 0.49 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1kr7:A | 80.9 | 88 | 86 | 0 | 0 | 60 | 66 | 74.3 | 81 | 100 | 56 | 0.0 | 0.22 | 0.23 | 0.22 | 0.53 | 1.0 | 0.50 | 100.0 | 1.0 | 0.00 |
sec | 2002_05 | dssp | 1ksh:B | 53.6 | 75 | 33 | 34 | 84 | 80 | 52 | 54.1 | 93 | 39 | 70 | 20.0 | 0.15 | 0.17 | 0.15 | 0.37 | 0.30 | 0.46 | 0.0 | 18.0 | 33.0 |
sec | 2002_05 | dssp | 1ktg:A | 75.2 | 87 | 72 | 53 | 100 | 97 | 63 | 80.1 | 95 | 68 | 82 | 8.7 | 0.45 | 0.45 | 0.45 | 0.70 | 0.62 | 0.68 | 0.0 | 5.0 | 20.0 |
sec | 2002_05 | dssp | 1kuu:A | 72.3 | 68 | 70 | 62 | 79 | 83 | 69 | 72.7 | 78 | 68 | 74 | 5.4 | 0.29 | 0.29 | 0.30 | 0.61 | 0.55 | 0.56 | 100.0 | 0.00 | 7.0 |
sec | 2002_05 | dssp | 1kv4:A | 92.9 | 93 | 96 | 0 | 0 | 91 | 84 | 73.9 | 68 | 100 | 100 | 0.0 | 0.59 | 0.60 | 0.58 | 0.83 | 1.0 | 0.83 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1kyq:B | 72.5 | 80 | 72 | 64 | 88 | 67 | 67 | 67.0 | 71 | 71 | 60 | 1.8 | 0.32 | 0.31 | 0.33 | 0.56 | 0.71 | 0.46 | 100.0 | 4.0 | 4.0 |
sec | 2002_05 | dssp | 1l1d:B | 72.8 | 66 | 86 | 50 | 80 | 89 | 66 | 62.6 | 61 | 52 | 69 | 1.3 | 0.34 | 0.32 | 0.37 | 0.68 | 0.53 | 0.51 | 100.0 | 6.0 | 10.0 |
sec | 2002_05 | dssp | 1l1s:A | 73.9 | 69 | 97 | 85 | 65 | 71 | 58 | 80.1 | 82 | 85 | 71 | 3.6 | 0.41 | 0.42 | 0.41 | 0.71 | 0.65 | 0.48 | 100.0 | 13.0 | 7.0 |
sec | 2002_05 | dssp | 1ldj:A | 85.5 | 100 | 83 | 0 | 0 | 42 | 100 | 69.8 | 74 | 100 | 57 | 0.0 | 0.39 | 0.30 | 0.49 | 0.59 | 1.0 | 0.59 | 100.0 | 14.0 | 0.00 |
sec | 2002_05 | dssp | 1ldv:A | 54.5 | 5 | 16 | 14 | 28 | 83 | 60 | 14.3 | 5 | 4 | 19 | 3.4 | 0.01 | 0.01 | 0.02 | 0.01 | 0.02 | 0.04 | 100.0 | 9.0 | 12.0 |
sec | 2002_05 | dssp | 1lgj:A | 60.7 | 80 | 65 | 0 | 0 | 26 | 43 | 45.0 | 58 | 100 | 20 | 0.0 | 0.00 | 0.00 | 0.01 | 0.07 | 1.0 | 0.07 | 100.0 | 14.0 | 0.00 |
sec | 2002_05 | dssp | 1lgo:A | 56.8 | 63 | 78 | 0 | 0 | 43 | 48 | 54.3 | 68 | 100 | 31 | 8.3 | 0.05 | 0.06 | 0.04 | 0.28 | 1.0 | 0.20 | 0.0 | 12.0 | 16.0 |
sec | 2002_05 | dssp | 1lgz:A | 45.1 | 23 | 55 | 0 | 0 | 74 | 41 | 48.0 | 35 | 100 | 65 | 0.0 | 0.00 | 0.00 | 0.00 | -0.02 | 1.0 | -0.02 | 0.0 | 32.0 | 0.00 |
sec | 2002_05 | dssp | 1lh8:A | 56.2 | 56 | 82 | 0 | 0 | 56 | 26 | 40.1 | 39 | 100 | 43 | 0.0 | 0.00 | 0.01 | 0.01 | 0.10 | 1.0 | 0.10 | 100.0 | 24.0 | 0.00 |
sec | 2002_05 | dssp | 1li1:A | 68.9 | 4 | 11 | 65 | 85 | 86 | 63 | 59.1 | 3 | 62 | 67 | 2.1 | 0.22 | 0.20 | 0.25 | 0.00 | 0.59 | 0.45 | 100.0 | 6.0 | 10.0 |
sec | 2002_05 | dssp | 1li5:A | 81.6 | 89 | 92 | 56 | 85 | 86 | 71 | 74.7 | 92 | 66 | 62 | 0.0 | 0.51 | 0.50 | 0.53 | 0.84 | 0.63 | 0.63 | 100.0 | 1.0 | 6.0 |
sec | 2002_05 | dssp | 1lja:A | 74.5 | 87 | 78 | 0 | 0 | 42 | 59 | 61.4 | 68 | 100 | 42 | 0.0 | 0.09 | 0.09 | 0.10 | 0.33 | 1.0 | 0.33 | 100.0 | 8.0 | 0.00 |
sec | 2002_05 | dssp | 1lk8:A | 51.3 | 53 | 46 | 40 | 37 | 53 | 61 | 45.7 | 45 | 43 | 46 | 7.5 | 0.05 | 0.05 | 0.05 | 0.24 | 0.25 | 0.18 | 100.0 | 4.0 | 1.0 |
sec | 2002_05 | dssp | 1ll3:A | 65.7 | 56 | 78 | 65 | 63 | 74 | 59 | 66.0 | 62 | 70 | 67 | 4.2 | 0.21 | 0.21 | 0.22 | 0.49 | 0.55 | 0.40 | 100.0 | 11.0 | 0.00 |
sec | 2002_05 | dssp | 1ln4:A | 88.8 | 97 | 95 | 95 | 73 | 76 | 93 | 87.2 | 100 | 100 | 72 | 0.0 | 0.68 | 0.69 | 0.68 | 0.93 | 0.78 | 0.76 | 0.0 | 1.0 | 6.0 |
sec | 2002_05 | dssp | 1lpl:A | 73.7 | 36 | 100 | 93 | 63 | 69 | 82 | 80.7 | 54 | 85 | 83 | 1.0 | 0.35 | 0.33 | 0.37 | 0.57 | 0.62 | 0.50 | 0.0 | 7.0 | 15.0 |
sec | 2002_05 | dssp | 1lr0:A | 68.3 | 51 | 97 | 86 | 80 | 90 | 46 | 49.4 | 35 | 95 | 80 | 2.3 | 0.39 | 0.40 | 0.38 | 0.54 | 0.79 | 0.47 | 100.0 | 26.0 | 1.0 |
sec | 2002_05 | dssp | 1lu7:A | 57.4 | 88 | 66 | 29 | 15 | 36 | 71 | 42.1 | 53 | 12 | 36 | 4.4 | 0.21 | 0.22 | 0.21 | 0.55 | 0.08 | 0.25 | 100.0 | 13.0 | 9.0 |
sec | 2002_05 | dssp | THIS_month:psum | 70.7 | 63 | 70 | 44 | 45 | 68 | 68 | 64.5 | 63.1 | 72.0 | 62.0 | 2.8 | 0.26 | 0.25 | 0.27 | 0.52 | 0.66 | 0.43 | 78.3 | 8.7 | 6 |
sec | 2002_05 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |