METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2002_05 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_05 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2002_05 | dssp | THIS_month:psum | 70.1 | 53 | 63 | 40 | 51 | 77 | 65 | 63.5 | 58.1 | 68.8 | 63.9 | 2.9 | 0.25 | 0.24 | 0.27 | 0.55 | 0.66 | 0.42 | 89.2 | 9.9 | 7.7 |
sec | 2002_05 | dssp | 1cix:A | 70.5 | 0 | 0 | 9 | 25 | 90 | 75 | 49.4 | 100 | 9 | 62 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 0.00 | 0.00 | 100.0 | 0.00 | 15.0 |
sec | 2002_05 | dssp | 1go4:G | 83.0 | 83 | 92 | 75 | 100 | 85 | 60 | 64.4 | 61 | 75 | 81 | 2.0 | 0.45 | 0.47 | 0.44 | 0.62 | 0.85 | 0.62 | 100.0 | 6.0 | 2.0 |
sec | 2002_05 | dssp | 1hxv:A | 70.6 | 33 | 75 | 67 | 72 | 80 | 69 | 64.2 | 47 | 82 | 56 | 0.0 | 0.24 | 0.23 | 0.26 | 0.46 | 0.53 | 0.40 | 100.0 | 5.0 | 2.0 |
sec | 2002_05 | dssp | 1iko:P | 72.3 | 0 | 0 | 65 | 68 | 88 | 78 | 67.2 | 0 | 69 | 77 | 6.3 | 0.24 | 0.22 | 0.26 | -0.06 | 0.52 | 0.55 | 100.0 | 5.0 | 1.0 |
sec | 2002_05 | dssp | 1jjv:A | 86.2 | 92 | 82 | 100 | 90 | 73 | 89 | 94.0 | 100 | 100 | 85 | 0.0 | 0.60 | 0.61 | 0.61 | 0.76 | 0.93 | 0.71 | 100.0 | 5.0 | 1.0 |
sec | 2002_05 | dssp | 1jni:A | 69.4 | 0 | 0 | 25 | 11 | 95 | 79 | 59.8 | 0 | 25 | 81 | 9.6 | 0.17 | 0.12 | 0.22 | 1.0 | 0.07 | 0.44 | 100.0 | 22.0 | 8.0 |
sec | 2002_05 | dssp | 1jsx:A | 85.7 | 100 | 83 | 0 | 0 | 44 | 100 | 88.6 | 100 | 100 | 55 | 0.0 | 0.40 | 0.31 | 0.50 | 0.61 | 1.0 | 0.61 | 100.0 | 14.0 | 0.00 |
sec | 2002_05 | dssp | 1k45:A | 68.5 | 0 | 0 | 62 | 76 | 79 | 66 | 61.3 | 0 | 64 | 62 | 1.1 | 0.15 | 0.15 | 0.16 | -0.03 | 0.46 | 0.40 | 0.0 | 1.0 | 8.0 |
sec | 2002_05 | dssp | 1kjy:B | 51.4 | 58 | 50 | 0 | 0 | 44 | 53 | 50.6 | 57 | 100 | 44 | 0.0 | 0.00 | 0.00 | 0.00 | 0.03 | 1.0 | 0.03 | 100.0 | 8.0 | 0.00 |
sec | 2002_05 | dssp | 1kpp:A | 72.9 | 76 | 87 | 53 | 57 | 78 | 72 | 77.4 | 89 | 51 | 81 | 0.0 | 0.35 | 0.34 | 0.36 | 0.76 | 0.43 | 0.45 | 100.0 | 3.0 | 1.0 |
sec | 2002_05 | dssp | 1ksh:B | 50.9 | 87 | 32 | 26 | 94 | 80 | 51 | 55.3 | 100 | 36 | 71 | 21.8 | 0.18 | 0.19 | 0.18 | 0.40 | 0.33 | 0.45 | 100.0 | 24.0 | 40.0 |
sec | 2002_05 | dssp | 1ktg:A | 73.0 | 77 | 79 | 55 | 94 | 97 | 57 | 79.0 | 87 | 75 | 76 | 6.5 | 0.39 | 0.40 | 0.40 | 0.69 | 0.59 | 0.62 | 100.0 | 0.00 | 18.0 |
sec | 2002_05 | dssp | 1kuu:A | 77.7 | 73 | 78 | 70 | 91 | 86 | 69 | 79.6 | 78 | 79 | 80 | 0.9 | 0.41 | 0.41 | 0.42 | 0.70 | 0.70 | 0.58 | 100.0 | 1.0 | 8.0 |
sec | 2002_05 | dssp | 1kv4:A | 54.8 | 36 | 100 | 0 | 0 | 100 | 44 | 60.3 | 53 | 100 | 77 | 9.5 | 0.22 | 0.26 | 0.18 | 0.37 | 1.0 | 0.47 | 100.0 | 45.0 | 9.0 |
sec | 2002_05 | dssp | 1kyq:B | 68.9 | 66 | 70 | 62 | 81 | 74 | 64 | 73.3 | 84 | 66 | 64 | 4.7 | 0.24 | 0.24 | 0.25 | 0.45 | 0.66 | 0.46 | 100.0 | 2.0 | 4.0 |
sec | 2002_05 | dssp | 1l1d:B | 70.1 | 46 | 100 | 52 | 84 | 94 | 61 | 60.4 | 51 | 60 | 65 | 0.0 | 0.35 | 0.31 | 0.41 | 0.62 | 0.57 | 0.47 | 100.0 | 14.0 | 10.0 |
sec | 2002_05 | dssp | 1l1s:A | 73.0 | 55 | 96 | 81 | 81 | 93 | 55 | 75.6 | 69 | 90 | 73 | 3.6 | 0.41 | 0.41 | 0.41 | 0.60 | 0.75 | 0.57 | 0.0 | 19.0 | 0.00 |
sec | 2002_05 | dssp | 1ldj:A | 83.6 | 97 | 83 | 0 | 0 | 42 | 85 | 68.9 | 74 | 100 | 53 | 0.0 | 0.26 | 0.21 | 0.32 | 0.52 | 1.0 | 0.52 | 100.0 | 12.0 | 0.00 |
sec | 2002_05 | dssp | 1ldj:B | 72.7 | 54 | 75 | 20 | 50 | 94 | 75 | 66.2 | 63 | 22 | 82 | 3.4 | 0.23 | 0.19 | 0.27 | 0.59 | 0.20 | 0.45 | 100.0 | 3.0 | 13.0 |
sec | 2002_05 | dssp | 1ldv:A | 59.8 | 0 | 0 | 0 | 0 | 100 | 59 | 3.4 | 0 | 0 | 5 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 100.0 | 14.0 | 25.0 |
sec | 2002_05 | dssp | 1lgj:A | 64.3 | 70 | 72 | 0 | 0 | 54 | 50 | 60.1 | 68 | 100 | 45 | 0.0 | 0.04 | 0.04 | 0.04 | 0.23 | 1.0 | 0.23 | 100.0 | 2.0 | 0.00 |
sec | 2002_05 | dssp | 1lgo:A | 63.2 | 65 | 87 | 0 | 0 | 58 | 56 | 61.3 | 69 | 100 | 46 | 7.0 | 0.13 | 0.16 | 0.10 | 0.44 | 1.0 | 0.34 | 0.0 | 16.0 | 14.0 |
sec | 2002_05 | dssp | 1li1:A | 68.0 | 0 | 0 | 57 | 87 | 93 | 60 | 56.9 | 0 | 62 | 63 | 0.4 | 0.22 | 0.17 | 0.28 | 1.0 | 0.55 | 0.44 | 100.0 | 10.0 | 15.0 |
sec | 2002_05 | dssp | 1li5:A | 79.1 | 81 | 96 | 50 | 84 | 91 | 66 | 76.2 | 90 | 56 | 70 | 0.0 | 0.48 | 0.47 | 0.51 | 0.82 | 0.58 | 0.61 | 100.0 | 6.0 | 8.0 |
sec | 2002_05 | dssp | 1lja:A | 68.6 | 80 | 76 | 0 | 0 | 40 | 46 | 54.7 | 57 | 100 | 43 | 0.0 | 0.03 | 0.04 | 0.04 | 0.21 | 1.0 | 0.21 | 100.0 | 3.0 | 0.00 |
sec | 2002_05 | dssp | 1lpl:A | 80.0 | 36 | 100 | 83 | 76 | 86 | 80 | 84.6 | 54 | 90 | 87 | 1.0 | 0.39 | 0.36 | 0.42 | 0.57 | 0.69 | 0.61 | 100.0 | 7.0 | 3.0 |
sec | 2002_05 | dssp | 1lr0:A | 67.5 | 52 | 92 | 78 | 94 | 90 | 44 | 49.1 | 37 | 95 | 69 | 0.7 | 0.39 | 0.40 | 0.40 | 0.50 | 0.83 | 0.45 | 100.0 | 23.0 | 3.0 |
sec | 2002_05 | dssp | 1lu7:A | 57.4 | 81 | 67 | 37 | 18 | 41 | 67 | 37.5 | 39 | 22 | 38 | 4.0 | 0.15 | 0.16 | 0.15 | 0.52 | 0.13 | 0.23 | 100.0 | 8.0 | 10.0 |
sec | 2002_05 | dssp | THIS_month:psum | 70.1 | 53 | 63 | 40 | 51 | 77 | 65 | 63.5 | 58.1 | 68.8 | 63.9 | 2.9 | 0.25 | 0.24 | 0.27 | 0.55 | 0.66 | 0.42 | 89.2 | 9.9 | 7.7 |
sec | 2002_05 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_05 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_05 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |