METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2002_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_01 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_01 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2002_01 | dssp | THIS_month:psum | 74.9 | 61 | 73 | 40 | 49 | 79 | 66 | 69.6 | 75.4 | 69.2 | 67.8 | 1.9 | 0.31 | 0.31 | 0.31 | 0.65 | 0.65 | 0.51 | 88.8 | 8.3 | 4.4 |
sec | 2002_01 | dssp | 1ear:A | 74.6 | 61 | 79 | 80 | 81 | 76 | 67 | 75.6 | 74 | 88 | 65 | 1.4 | 0.35 | 0.35 | 0.36 | 0.62 | 0.68 | 0.51 | 100.0 | 4.0 | 0.00 |
sec | 2002_01 | dssp | 1ez4:A | 75.3 | 64 | 100 | 75 | 85 | 91 | 56 | 77.8 | 76 | 87 | 73 | 0.0 | 0.48 | 0.48 | 0.49 | 0.70 | 0.75 | 0.55 | 0.0 | 16.0 | 2.0 |
sec | 2002_01 | dssp | 1ez4:B | 75.3 | 64 | 100 | 75 | 85 | 91 | 56 | 77.8 | 76 | 87 | 73 | 0.0 | 0.48 | 0.48 | 0.49 | 0.70 | 0.75 | 0.55 | 0.0 | 16.0 | 2.0 |
sec | 2002_01 | dssp | 1hj0:A | 56.1 | 43 | 100 | 0 | 0 | 100 | 33 | 63.0 | 65 | 100 | 53 | 0.0 | 0.18 | 0.20 | 0.17 | 0.38 | 1.0 | 0.38 | 100.0 | 43.0 | 0.00 |
sec | 2002_01 | dssp | 1hty:A | 73.9 | 73 | 77 | 53 | 82 | 86 | 69 | 67.5 | 70 | 62 | 68 | 2.2 | 0.32 | 0.31 | 0.34 | 0.68 | 0.56 | 0.54 | 100.0 | 1.0 | 10.0 |
sec | 2002_01 | dssp | 1hzm:A | 67.5 | 86 | 59 | 72 | 30 | 58 | 90 | 72.2 | 85 | 48 | 69 | 1.9 | 0.27 | 0.31 | 0.25 | 0.57 | 0.41 | 0.46 | 100.0 | 12.0 | 9.0 |
sec | 2002_01 | dssp | 1ijh:A | 68.3 | 42 | 93 | 57 | 74 | 89 | 61 | 53.7 | 51 | 63 | 50 | 0.4 | 0.29 | 0.26 | 0.33 | 0.55 | 0.56 | 0.42 | 100.0 | 15.0 | 5.0 |
sec | 2002_01 | dssp | 1ijl:A | 64.2 | 41 | 96 | 66 | 35 | 87 | 60 | 63.0 | 56 | 60 | 69 | 4.0 | 0.22 | 0.22 | 0.22 | 0.49 | 0.43 | 0.41 | 100.0 | 26.0 | 6.0 |
sec | 2002_01 | dssp | 1jad:A | 88.0 | 94 | 91 | 0 | 0 | 48 | 60 | 53.1 | 51 | 100 | 67 | 0.0 | 0.20 | 0.19 | 0.22 | 0.47 | 1.0 | 0.47 | 100.0 | 2.0 | 0.00 |
sec | 2002_01 | dssp | 1jgk:A | 86.4 | 0 | 0 | 76 | 86 | 92 | 86 | 78.9 | 100 | 76 | 80 | 0.0 | 0.40 | 0.40 | 0.42 | 1.0 | 0.70 | 0.70 | 100.0 | 0.00 | 4.0 |
sec | 2002_01 | dssp | 1jgs:A | 86.2 | 97 | 85 | 81 | 90 | 63 | 86 | 91.7 | 100 | 90 | 74 | 0.0 | 0.53 | 0.51 | 0.57 | 0.75 | 0.84 | 0.65 | 100.0 | 8.0 | 0.00 |
sec | 2002_01 | dssp | 1jh1:A | 81.6 | 57 | 95 | 76 | 57 | 92 | 86 | 78.7 | 68 | 82 | 81 | 5.0 | 0.42 | 0.42 | 0.44 | 0.69 | 0.58 | 0.72 | 100.0 | 9.0 | 5.0 |
sec | 2002_01 | dssp | 1jke:A | 72.4 | 85 | 82 | 67 | 68 | 70 | 70 | 59.3 | 88 | 48 | 59 | 6.8 | 0.37 | 0.37 | 0.37 | 0.79 | 0.44 | 0.54 | 100.0 | 0.00 | 0.00 |
sec | 2002_01 | dssp | 1joc:A | 51.2 | 47 | 67 | 0 | 0 | 71 | 40 | 26.5 | 23 | 0 | 45 | 3.2 | 0.02 | 0.02 | 0.03 | 0.18 | 1.0 | 0.16 | 100.0 | 16.0 | 9.0 |
sec | 2002_01 | dssp | 1jr8:A | 86.7 | 84 | 95 | 0 | 0 | 90 | 75 | 95.7 | 96 | 100 | 94 | 0.9 | 0.44 | 0.47 | 0.41 | 0.71 | 1.0 | 0.73 | 100.0 | 7.0 | 0.00 |
sec | 2002_01 | dssp | 1jr8:B | 83.8 | 81 | 95 | 0 | 0 | 90 | 68 | 78.8 | 74 | 100 | 90 | 0.9 | 0.37 | 0.41 | 0.34 | 0.66 | 1.0 | 0.68 | 100.0 | 10.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:A | 87.7 | 85 | 95 | 0 | 0 | 91 | 78 | 96.7 | 96 | 100 | 97 | 0.9 | 0.47 | 0.50 | 0.44 | 0.74 | 1.0 | 0.76 | 100.0 | 6.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:C | 88.6 | 87 | 95 | 0 | 0 | 91 | 80 | 95.7 | 96 | 100 | 94 | 0.9 | 0.49 | 0.52 | 0.46 | 0.75 | 1.0 | 0.77 | 100.0 | 5.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:D | 85.4 | 82 | 95 | 0 | 0 | 91 | 73 | 93.7 | 93 | 100 | 94 | 0.9 | 0.41 | 0.45 | 0.39 | 0.70 | 1.0 | 0.71 | 100.0 | 8.0 | 0.00 |
sec | 2002_01 | dssp | 1jy8:A | 65.2 | 69 | 84 | 47 | 71 | 76 | 50 | 61.4 | 75 | 50 | 58 | 2.5 | 0.26 | 0.26 | 0.28 | 0.65 | 0.45 | 0.37 | 0.0 | 6.0 | 10.0 |
sec | 2002_01 | dssp | 1k04:A | 85.2 | 90 | 91 | 0 | 0 | 67 | 65 | 80.2 | 81 | 100 | 76 | 0.0 | 0.29 | 0.31 | 0.28 | 0.59 | 1.0 | 0.57 | 100.0 | 1.0 | 0.00 |
sec | 2002_01 | dssp | 1k2f:A | 69.5 | 57 | 68 | 64 | 84 | 80 | 60 | 64.9 | 64 | 79 | 51 | 2.1 | 0.27 | 0.27 | 0.28 | 0.54 | 0.60 | 0.45 | 100.0 | 3.0 | 9.0 |
sec | 2002_01 | dssp | 1k7c:A | 73.0 | 65 | 93 | 59 | 47 | 84 | 71 | 65.3 | 70 | 49 | 66 | 5.1 | 0.32 | 0.32 | 0.32 | 0.68 | 0.43 | 0.57 | 100.0 | 12.0 | 3.0 |
sec | 2002_01 | dssp | 1k8t:A | 62.7 | 68 | 70 | 26 | 41 | 69 | 60 | 59.8 | 82 | 28 | 50 | 5.4 | 0.13 | 0.13 | 0.14 | 0.47 | 0.23 | 0.36 | 100.0 | 1.0 | 5.0 |
sec | 2002_01 | dssp | 1k9q:A | 87.5 | 0 | 0 | 61 | 100 | 100 | 84 | 80.0 | 100 | 69 | 85 | 0.0 | 0.50 | 0.45 | 0.57 | 1.0 | 0.72 | 0.72 | 100.0 | 0.00 | 12.0 |
sec | 2002_01 | dssp | 1k9r:A | 82.5 | 0 | 0 | 53 | 100 | 100 | 78 | 75.0 | 100 | 66 | 80 | 0.0 | 0.42 | 0.36 | 0.48 | 1.0 | 0.64 | 0.64 | 100.0 | 0.00 | 17.0 |
sec | 2002_01 | dssp | 1kb0:A | 74.7 | 14 | 60 | 64 | 88 | 94 | 70 | 62.1 | 17 | 73 | 63 | 1.2 | 0.30 | 0.26 | 0.35 | 0.25 | 0.64 | 0.54 | 100.0 | 8.0 | 9.0 |
sec | 2002_01 | dssp | 1kbe:A | 49.0 | 0 | 0 | 18 | 40 | 57 | 73 | 41.6 | 100 | 27 | 44 | 2.0 | 0.05 | 0.07 | 0.04 | 1.0 | 0.14 | -0.12 | 100.0 | 28.0 | 12.0 |
sec | 2002_01 | dssp | 1khv:B | 64.0 | 75 | 72 | 38 | 41 | 62 | 63 | 57.5 | 65 | 45 | 54 | 6.8 | 0.17 | 0.17 | 0.17 | 0.53 | 0.28 | 0.38 | 100.0 | 2.0 | 1.0 |
sec | 2002_01 | dssp | 1kkc:A | 78.0 | 87 | 83 | 56 | 93 | 68 | 64 | 72.5 | 70 | 80 | 73 | 1.0 | 0.36 | 0.35 | 0.38 | 0.65 | 0.69 | 0.50 | 100.0 | 3.0 | 5.0 |
sec | 2002_01 | dssp | 1kkc:B | 76.4 | 87 | 82 | 48 | 92 | 66 | 61 | 69.6 | 69 | 68 | 70 | 1.0 | 0.34 | 0.33 | 0.36 | 0.63 | 0.63 | 0.47 | 100.0 | 3.0 | 6.0 |
sec | 2002_01 | dssp | 1kkc:X | 77.0 | 87 | 81 | 56 | 93 | 65 | 63 | 70.9 | 69 | 80 | 69 | 1.0 | 0.35 | 0.34 | 0.37 | 0.63 | 0.69 | 0.48 | 100.0 | 4.0 | 5.0 |
sec | 2002_01 | dssp | 1kni:A | 74.1 | 78 | 90 | 40 | 66 | 76 | 51 | 59.1 | 62 | 46 | 53 | 1.2 | 0.28 | 0.29 | 0.29 | 0.59 | 0.48 | 0.46 | 100.0 | 8.0 | 3.0 |
sec | 2002_01 | dssp | 1knz:A | 77.8 | 77 | 94 | 0 | 0 | 80 | 50 | 79.4 | 83 | 100 | 61 | 2.7 | 0.22 | 0.27 | 0.18 | 0.48 | 1.0 | 0.52 | 100.0 | 14.0 | 2.0 |
sec | 2002_01 | dssp | 1kov:A | 70.7 | 0 | 0 | 46 | 41 | 78 | 82 | 43.4 | 100 | 41 | 43 | 0.0 | 0.04 | 0.05 | 0.05 | 1.0 | 0.24 | 0.24 | 100.0 | 0.00 | 3.0 |
sec | 2002_01 | dssp | 1kpl:B | 76.3 | 82 | 88 | 0 | 0 | 60 | 64 | 66.2 | 72 | 0 | 50 | 7.0 | 0.19 | 0.23 | 0.17 | 0.45 | -0.03 | 0.51 | 0.0 | 5.0 | 7.0 |
sec | 2002_01 | dssp | THIS_month:psum | 74.9 | 61 | 73 | 40 | 49 | 79 | 66 | 69.6 | 75.4 | 69.2 | 67.8 | 1.9 | 0.31 | 0.31 | 0.31 | 0.65 | 0.65 | 0.51 | 88.8 | 8.3 | 4.4 |
sec | 2002_01 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_01 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |