METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2001_12 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_12 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_12 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_12 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2001_12 | dssp | THIS_month:psum | 78.1 | 73 | 72 | 61 | 72 | 76 | 75 | 74.0 | 74.7 | 77.1 | 68.1 | 1.6 | 0.41 | 0.41 | 0.42 | 0.66 | 0.70 | 0.57 | 72.8 | 5.7 | 4.9 |
sec | 2001_12 | dssp | 1gmx:A | 85.9 | 100 | 96 | 60 | 81 | 87 | 77 | 83.6 | 100 | 60 | 81 | 0.0 | 0.66 | 0.65 | 0.68 | 0.96 | 0.62 | 0.71 | 0.0 | 1.0 | 6.0 |
sec | 2001_12 | dssp | 1gn0:A | 82.4 | 91 | 91 | 61 | 81 | 83 | 74 | 80.8 | 91 | 61 | 78 | 0.0 | 0.52 | 0.51 | 0.53 | 0.84 | 0.65 | 0.64 | 100.0 | 0.00 | 4.0 |
sec | 2001_12 | dssp | 1go3:F | 78.5 | 98 | 81 | 37 | 60 | 50 | 73 | 71.4 | 81 | 50 | 56 | 0.0 | 0.41 | 0.37 | 0.46 | 0.69 | 0.44 | 0.47 | 0.0 | 13.0 | 2.0 |
sec | 2001_12 | dssp | 1go3:N | 80.2 | 98 | 83 | 37 | 60 | 51 | 72 | 73.5 | 83 | 50 | 58 | 0.0 | 0.43 | 0.39 | 0.48 | 0.72 | 0.44 | 0.48 | 0.0 | 11.0 | 2.0 |
sec | 2001_12 | dssp | 1hn3:A | 52.5 | 9 | 100 | 0 | 0 | 100 | 86 | 55.0 | 14 | 100 | 100 | 40.0 | 0.62 | 0.68 | 0.56 | 0.21 | 1.0 | 0.86 | 100.0 | 47.0 | 40.0 |
sec | 2001_12 | dssp | 1hqz:1 | 91.4 | 95 | 90 | 90 | 93 | 88 | 91 | 97.8 | 100 | 100 | 94 | 0.0 | 0.70 | 0.70 | 0.70 | 0.89 | 0.89 | 0.82 | 100.0 | 2.0 | 0.00 |
sec | 2001_12 | dssp | 1hqz:3 | 89.6 | 95 | 86 | 88 | 96 | 85 | 88 | 89.1 | 88 | 97 | 85 | 0.0 | 0.67 | 0.68 | 0.68 | 0.85 | 0.90 | 0.78 | 100.0 | 3.0 | 2.0 |
sec | 2001_12 | dssp | 1hqz:4 | 89.1 | 95 | 84 | 90 | 93 | 83 | 90 | 92.4 | 87 | 100 | 91 | 0.0 | 0.65 | 0.66 | 0.66 | 0.84 | 0.89 | 0.77 | 100.0 | 4.0 | 0.00 |
sec | 2001_12 | dssp | 1hqz:5 | 89.7 | 97 | 84 | 88 | 96 | 84 | 90 | 88.8 | 87 | 97 | 85 | 0.0 | 0.68 | 0.69 | 0.69 | 0.86 | 0.90 | 0.78 | 100.0 | 5.0 | 2.0 |
sec | 2001_12 | dssp | 1hqz:7 | 90.3 | 97 | 85 | 90 | 93 | 84 | 92 | 92.6 | 87 | 100 | 92 | 0.0 | 0.69 | 0.69 | 0.69 | 0.87 | 0.89 | 0.80 | 100.0 | 4.0 | 0.00 |
sec | 2001_12 | dssp | 1hqz:8 | 89.4 | 97 | 84 | 90 | 93 | 82 | 92 | 91.7 | 87 | 100 | 90 | 0.0 | 0.67 | 0.68 | 0.67 | 0.85 | 0.89 | 0.78 | 100.0 | 5.0 | 0.00 |
sec | 2001_12 | dssp | 1i35:A | 78.9 | 85 | 71 | 80 | 90 | 74 | 78 | 78.4 | 92 | 88 | 66 | 0.0 | 0.47 | 0.47 | 0.47 | 0.68 | 0.80 | 0.57 | 0.0 | 5.0 | 3.0 |
sec | 2001_12 | dssp | 1i3b:A | 65.3 | 0 | 0 | 28 | 94 | 98 | 60 | 43.8 | 100 | 35 | 51 | 0.0 | 0.16 | 0.12 | 0.21 | 1.0 | 0.38 | 0.38 | 0.0 | 0.00 | 33.0 |
sec | 2001_12 | dssp | 1ilw:A | 75.4 | 89 | 73 | 59 | 83 | 74 | 74 | 70.1 | 90 | 68 | 58 | 2.2 | 0.37 | 0.37 | 0.38 | 0.70 | 0.63 | 0.54 | 0.0 | 7.0 | 7.0 |
sec | 2001_12 | dssp | 1im5:A | 74.9 | 89 | 71 | 59 | 83 | 73 | 74 | 70.1 | 89 | 68 | 59 | 2.2 | 0.36 | 0.36 | 0.38 | 0.69 | 0.63 | 0.53 | 0.0 | 7.0 | 7.0 |
sec | 2001_12 | dssp | 1j83:A | 77.8 | 38 | 100 | 67 | 82 | 90 | 74 | 78.3 | 53 | 73 | 85 | 0.5 | 0.32 | 0.30 | 0.36 | 0.60 | 0.61 | 0.57 | 100.0 | 4.0 | 7.0 |
sec | 2001_12 | dssp | 1jju:C | 79.7 | 46 | 58 | 0 | 0 | 87 | 87 | 48.5 | 46 | 100 | 48 | 0.0 | 0.14 | 0.16 | 0.13 | 0.42 | 1.0 | 0.34 | 100.0 | 3.0 | 3.0 |
sec | 2001_12 | dssp | 1jmq:A | 71.7 | 0 | 0 | 55 | 55 | 75 | 87 | 59.6 | 100 | 47 | 61 | 0.0 | 0.15 | 0.20 | 0.12 | 1.0 | 0.44 | 0.26 | 100.0 | 10.0 | 0.00 |
sec | 2001_12 | dssp | 1jmv:A | 75.7 | 89 | 79 | 68 | 88 | 63 | 63 | 73.5 | 70 | 88 | 66 | 0.0 | 0.44 | 0.43 | 0.45 | 0.71 | 0.72 | 0.44 | 0.0 | 5.0 | 5.0 |
sec | 2001_12 | dssp | 1jmv:B | 72.3 | 91 | 64 | 73 | 81 | 57 | 77 | 69.1 | 87 | 80 | 53 | 1.4 | 0.36 | 0.36 | 0.37 | 0.62 | 0.71 | 0.46 | 0.0 | 13.0 | 2.0 |
sec | 2001_12 | dssp | 1jpm:C | 81.8 | 95 | 87 | 56 | 96 | 84 | 70 | 81.3 | 91 | 69 | 78 | 0.8 | 0.54 | 0.53 | 0.56 | 0.85 | 0.68 | 0.63 | 0.0 | 3.0 | 10.0 |
sec | 2001_12 | dssp | 1ju3:A | 76.8 | 78 | 73 | 60 | 92 | 87 | 72 | 71.4 | 78 | 66 | 71 | 1.9 | 0.38 | 0.38 | 0.40 | 0.68 | 0.66 | 0.58 | 100.0 | 1.0 | 10.0 |
sec | 2001_12 | dssp | 1ju4:A | 77.9 | 79 | 75 | 60 | 94 | 88 | 72 | 73.2 | 78 | 67 | 74 | 1.9 | 0.41 | 0.40 | 0.43 | 0.70 | 0.68 | 0.61 | 100.0 | 1.0 | 11.0 |
sec | 2001_12 | dssp | 1jzq:A | 75.9 | 88 | 79 | 51 | 72 | 72 | 72 | 65.2 | 73 | 48 | 64 | 1.8 | 0.35 | 0.34 | 0.36 | 0.71 | 0.55 | 0.53 | 100.0 | 4.0 | 4.0 |
sec | 2001_12 | dssp | 1jzr:B | 78.9 | 76 | 88 | 93 | 83 | 79 | 66 | 82.7 | 88 | 95 | 70 | 0.0 | 0.43 | 0.44 | 0.42 | 0.63 | 0.87 | 0.55 | 100.0 | 7.0 | 1.0 |
sec | 2001_12 | dssp | 1jzr:D | 73.7 | 77 | 79 | 94 | 84 | 64 | 63 | 69.9 | 78 | 95 | 53 | 0.0 | 0.32 | 0.33 | 0.33 | 0.49 | 0.88 | 0.43 | 100.0 | 1.0 | 0.00 |
sec | 2001_12 | dssp | 1jzs:A | 75.9 | 87 | 80 | 52 | 75 | 73 | 70 | 63.0 | 71 | 48 | 61 | 1.3 | 0.36 | 0.35 | 0.37 | 0.71 | 0.56 | 0.52 | 100.0 | 3.0 | 5.0 |
sec | 2001_12 | dssp | 1k0b:B | 79.3 | 74 | 91 | 94 | 88 | 83 | 62 | 82.3 | 86 | 95 | 71 | 0.0 | 0.46 | 0.47 | 0.45 | 0.63 | 0.90 | 0.57 | 100.0 | 11.0 | 0.00 |
sec | 2001_12 | dssp | 1k0b:D | 78.0 | 79 | 84 | 94 | 84 | 71 | 66 | 72.2 | 79 | 95 | 57 | 0.0 | 0.38 | 0.39 | 0.38 | 0.58 | 0.88 | 0.51 | 100.0 | 3.0 | 0.00 |
sec | 2001_12 | dssp | 1k0c:A | 83.6 | 78 | 95 | 94 | 94 | 90 | 66 | 88.4 | 89 | 100 | 82 | 0.0 | 0.54 | 0.56 | 0.53 | 0.71 | 0.93 | 0.65 | 100.0 | 10.0 | 0.00 |
sec | 2001_12 | dssp | 1k0d:D | 79.1 | 74 | 91 | 94 | 94 | 84 | 59 | 84.7 | 86 | 100 | 76 | 0.0 | 0.47 | 0.49 | 0.46 | 0.62 | 0.93 | 0.56 | 100.0 | 11.0 | 0.00 |
sec | 2001_12 | dssp | 1k0r:A | 41.2 | 100 | 13 | 33 | 16 | 36 | 90 | 37.1 | 24 | 33 | 38 | 1.1 | 0.10 | 0.13 | 0.07 | 0.27 | 0.15 | 0.08 | 100.0 | 43.0 | 7.0 |
sec | 2001_12 | dssp | 1k0v:A | 84.9 | 100 | 88 | 100 | 65 | 69 | 100 | 93.0 | 100 | 92 | 88 | 0.0 | 0.66 | 0.68 | 0.64 | 0.91 | 0.74 | 0.73 | 0.0 | 4.0 | 10.0 |
sec | 2001_12 | dssp | 1k6y:A | 82.3 | 89 | 84 | 83 | 89 | 69 | 74 | 77.9 | 85 | 91 | 61 | 0.0 | 0.50 | 0.49 | 0.51 | 0.72 | 0.84 | 0.58 | 100.0 | 3.0 | 1.0 |
sec | 2001_12 | dssp | 1k6y:B | 80.4 | 87 | 85 | 79 | 93 | 67 | 65 | 77.4 | 85 | 88 | 60 | 0.0 | 0.47 | 0.47 | 0.48 | 0.69 | 0.83 | 0.52 | 100.0 | 1.0 | 2.0 |
sec | 2001_12 | dssp | 1k6y:C | 82.7 | 89 | 85 | 84 | 93 | 70 | 71 | 78.6 | 85 | 93 | 61 | 0.0 | 0.51 | 0.51 | 0.52 | 0.72 | 0.86 | 0.58 | 100.0 | 2.0 | 1.0 |
sec | 2001_12 | dssp | 1k6y:D | 81.0 | 87 | 84 | 83 | 89 | 68 | 70 | 77.6 | 84 | 93 | 61 | 0.0 | 0.47 | 0.47 | 0.48 | 0.70 | 0.84 | 0.55 | 100.0 | 2.0 | 1.0 |
sec | 2001_12 | dssp | 1k8g:A | 71.0 | 73 | 54 | 68 | 77 | 72 | 74 | 63.2 | 74 | 74 | 53 | 3.3 | 0.27 | 0.28 | 0.27 | 0.55 | 0.58 | 0.48 | 100.0 | 5.0 | 4.0 |
sec | 2001_12 | dssp | 1k8g:B | 72.7 | 75 | 61 | 66 | 81 | 77 | 71 | 68.0 | 80 | 72 | 60 | 3.2 | 0.30 | 0.31 | 0.30 | 0.61 | 0.59 | 0.51 | 100.0 | 3.0 | 7.0 |
sec | 2001_12 | dssp | 1k8g:C | 71.6 | 75 | 57 | 67 | 78 | 73 | 73 | 65.4 | 75 | 72 | 57 | 3.2 | 0.28 | 0.29 | 0.28 | 0.58 | 0.58 | 0.49 | 100.0 | 5.0 | 5.0 |
sec | 2001_12 | dssp | 1k8k:C | 82.8 | 23 | 80 | 81 | 90 | 90 | 76 | 90.2 | 30 | 96 | 89 | 0.0 | 0.41 | 0.39 | 0.44 | 0.42 | 0.73 | 0.66 | 0.0 | 3.0 | 4.0 |
sec | 2001_12 | dssp | 1k8k:E | 80.3 | 94 | 78 | 0 | 0 | 76 | 83 | 74.4 | 94 | 0 | 66 | 0.5 | 0.40 | 0.36 | 0.44 | 0.73 | -0.01 | 0.61 | 0.0 | 9.0 | 5.0 |
sec | 2001_12 | dssp | 1k8k:F | 73.5 | 85 | 71 | 80 | 80 | 53 | 73 | 62.4 | 66 | 92 | 46 | 3.6 | 0.34 | 0.33 | 0.35 | 0.52 | 0.77 | 0.47 | 100.0 | 9.0 | 0.00 |
sec | 2001_12 | dssp | 1k8k:G | 79.0 | 81 | 87 | 0 | 0 | 75 | 78 | 75.8 | 81 | 100 | 68 | 5.0 | 0.29 | 0.33 | 0.25 | 0.58 | 1.0 | 0.64 | 0.0 | 5.0 | 6.0 |
sec | 2001_12 | dssp | 1k92:A | 77.3 | 88 | 75 | 55 | 87 | 75 | 75 | 73.6 | 89 | 60 | 65 | 3.3 | 0.37 | 0.36 | 0.39 | 0.67 | 0.64 | 0.59 | 100.0 | 6.0 | 6.0 |
sec | 2001_12 | dssp | 1k9i:A | 78.9 | 74 | 90 | 71 | 79 | 85 | 75 | 74.9 | 85 | 76 | 69 | 0.0 | 0.43 | 0.42 | 0.45 | 0.77 | 0.65 | 0.58 | 100.0 | 3.0 | 3.0 |
sec | 2001_12 | dssp | 1k9i:H | 77.2 | 67 | 86 | 71 | 82 | 85 | 71 | 75.6 | 78 | 81 | 70 | 0.0 | 0.40 | 0.40 | 0.42 | 0.71 | 0.67 | 0.55 | 100.0 | 4.0 | 3.0 |
sec | 2001_12 | dssp | 1k9j:B | 76.6 | 72 | 95 | 65 | 82 | 87 | 68 | 76.4 | 79 | 80 | 71 | 0.0 | 0.43 | 0.41 | 0.45 | 0.79 | 0.62 | 0.55 | 100.0 | 5.0 | 7.0 |
sec | 2001_12 | dssp | 1kca:A | 88.1 | 0 | 0 | 90 | 90 | 92 | 86 | 87.5 | 0 | 95 | 88 | 0.0 | 0.54 | 0.49 | 0.59 | 1.0 | 0.83 | 0.75 | 100.0 | 3.0 | 0.00 |
sec | 2001_12 | dssp | 1kee:A | 77.9 | 85 | 80 | 62 | 78 | 77 | 75 | 78.2 | 87 | 71 | 72 | 2.7 | 0.37 | 0.37 | 0.38 | 0.71 | 0.63 | 0.59 | 100.0 | 2.0 | 3.0 |
sec | 2001_12 | dssp | 1kee:B | 74.1 | 82 | 68 | 64 | 87 | 76 | 71 | 71.0 | 83 | 60 | 73 | 2.6 | 0.35 | 0.35 | 0.35 | 0.65 | 0.66 | 0.53 | 100.0 | 5.0 | 8.0 |
sec | 2001_12 | dssp | 1kek:A | 77.6 | 81 | 80 | 67 | 82 | 77 | 73 | 63.9 | 80 | 77 | 49 | 0.4 | 0.39 | 0.39 | 0.40 | 0.68 | 0.70 | 0.55 | 100.0 | 0.00 | 2.0 |
sec | 2001_12 | dssp | 1kgn:A | 89.9 | 93 | 94 | 0 | 0 | 76 | 78 | 80.2 | 86 | 100 | 62 | 0.0 | 0.45 | 0.47 | 0.43 | 0.74 | 1.0 | 0.70 | 100.0 | 0.00 | 1.0 |
sec | 2001_12 | dssp | 1kgo:A | 89.2 | 93 | 93 | 0 | 0 | 75 | 77 | 77.3 | 82 | 100 | 63 | 0.0 | 0.43 | 0.45 | 0.42 | 0.72 | 1.0 | 0.69 | 100.0 | 0.00 | 1.0 |
sec | 2001_12 | dssp | 1kgp:A | 89.9 | 93 | 94 | 0 | 0 | 77 | 77 | 78.1 | 82 | 100 | 65 | 0.0 | 0.45 | 0.48 | 0.43 | 0.74 | 1.0 | 0.71 | 100.0 | 1.0 | 1.0 |
sec | 2001_12 | dssp | 1ki0:A | 75.9 | 0 | 0 | 41 | 41 | 84 | 87 | 58.1 | 0 | 34 | 63 | 1.1 | 0.07 | 0.08 | 0.06 | -0.02 | 0.29 | 0.27 | 100.0 | 3.0 | 0.00 |
sec | 2001_12 | dssp | 1kke:A | 60.7 | 0 | 0 | 53 | 78 | 76 | 58 | 52.7 | 0 | 56 | 52 | 7.2 | 0.10 | 0.11 | 0.10 | -0.06 | 0.35 | 0.37 | 0.0 | 4.0 | 17.0 |
sec | 2001_12 | dssp | 1kke:B | 62.0 | 0 | 0 | 55 | 79 | 76 | 59 | 54.1 | 0 | 58 | 53 | 6.3 | 0.11 | 0.12 | 0.11 | -0.06 | 0.39 | 0.38 | 0.0 | 4.0 | 16.0 |
sec | 2001_12 | dssp | 1kmj:A | 82.3 | 90 | 86 | 62 | 89 | 82 | 75 | 82.7 | 89 | 69 | 82 | 0.8 | 0.49 | 0.48 | 0.50 | 0.79 | 0.70 | 0.65 | 100.0 | 2.0 | 5.0 |
sec | 2001_12 | dssp | THIS_month:psum | 78.1 | 73 | 72 | 61 | 72 | 76 | 75 | 74.0 | 74.7 | 77.1 | 68.1 | 1.6 | 0.41 | 0.41 | 0.42 | 0.66 | 0.70 | 0.57 | 72.8 | 5.7 | 4.9 |
sec | 2001_12 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2001_12 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2001_12 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |