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EVA summary for category sec (3)

Contents

Local link to information about methods evaluated
All prediction results for category sec (i.e. secondary structure)
Explanations of measures for prediction accuracy

For older versions see:

bup_common/index.html

About secondary structure methods evaluated

method		nprot	nweek	detailed results for method
ALL		253	36
EVAjury_sec3		245	35	method/eva3.html
EVAjury_sec4		219	31	method/eva4.html
EVAjury_sec5		135	22	method/eva5.html
EVAjury_sec6		118	21	method/eva6.html
JPRED		192	30	method/jpred.html
PHD		248	36	method/phd.html
PHDpsi		248	36	method/phdpsi.html
PROF		244	34	method/prof.html
PSIpred		245	35	method/psipred.html
PSSP		192	26	method/pssp.html
SAM-T99sec		128	23	method/samt99_sec.html
SSpro		222	32	method/sspro.html

Comparison of secondary structure methods (detail level 3)

Averages compiled over different subsets

The reason for compiling different averages is that not ALL proteins were predicted by all methods!
Only proteins with no significant sequence identity to previously known PDB proteins are reported, here.
The following subsets are given:

set 1: 102 proteins and 12 methods
set 2: 113 proteins and 11 methods
set 3: 167 proteins and 9 methods
set 4: 244 proteins and 5 methods

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 1			Sorted alphabetically for identical ranks!		MORE SCORES
common 1	102	dssp	1	EVAjury_sec3	78.2	+/-0.9	76.0	+/-1.5	54.4	+/-1.5	76.6	+/-1.5	74.0	+/-1.5	58.8	+/-1.5	76.4	+/-1.5	72.7	+/-1.5	77.6	+/-1.5	67.9	+/-1.5	69.1	+/-1.5	2.3	+/-1.5	0.39	+/-1.49	0.69	+/-1.49	0.62	+/-1.49	0.58	+/-1.49	90.2	+/-1.5	5.4	+/-1.5	3.9	+/-1.5
				EVAjury_sec4	77.8	+/-0.9	75.9	+/-1.5	51.8	+/-1.5	77.5	+/-1.5	74.9	+/-1.5	61.2	+/-1.5	75.3	+/-1.5	72.5	+/-1.5	77.9	+/-1.5	67.6	+/-1.5	68.3	+/-1.5	1.9	+/-1.5	0.38	+/-1.49	0.70	+/-1.49	0.63	+/-1.49	0.57	+/-1.49	82.4	+/-1.5	5.6	+/-1.5	4.8	+/-1.5
				EVAjury_sec5	78.2	+/-0.9	76.4	+/-1.5	52.0	+/-1.5	77.4	+/-1.5	75.6	+/-1.5	62.7	+/-1.5	75.5	+/-1.5	72.8	+/-1.5	78.5	+/-1.5	67.7	+/-1.5	68.6	+/-1.5	1.7	+/-1.5	0.39	+/-1.49	0.71	+/-1.49	0.63	+/-1.49	0.57	+/-1.49	83.3	+/-1.5	5.6	+/-1.5	4.8	+/-1.5
				EVAjury_sec6	78.3	+/-0.9	75.8	+/-1.5	51.5	+/-1.5	78.0	+/-1.5	76.2	+/-1.5	63.2	+/-1.5	75.6	+/-1.5	72.1	+/-1.5	76.9	+/-1.5	67.6	+/-1.5	68.5	+/-1.5	1.7	+/-1.5	0.39	+/-1.49	0.71	+/-1.49	0.63	+/-1.49	0.57	+/-1.49	83.3	+/-1.5	5.6	+/-1.5	4.8	+/-1.5
				PSIpred	77.4	+/-1.0	75.1	+/-1.5	53.5	+/-1.5	76.5	+/-1.5	73.3	+/-1.5	57.6	+/-1.5	75.7	+/-1.5	73.4	+/-1.5	78.7	+/-1.5	66.8	+/-1.5	69.9	+/-1.5	2.4	+/-1.5	0.38	+/-1.49	0.68	+/-1.49	0.60	+/-1.49	0.57	+/-1.49	85.3	+/-1.5	5.1	+/-1.5	4.4	+/-1.5
common 1	102	dssp	2	JPRED	75.7	+/-0.9	66.7	+/-1.5	44.8	+/-1.5	81.5	+/-1.5	73.0	+/-1.5	60.9	+/-1.5	69.3	+/-1.5	68.7	+/-1.5	69.7	+/-1.5	62.8	+/-1.5	66.9	+/-1.5	1.8	+/-1.5	0.34	+/-1.49	0.68	+/-1.49	0.60	+/-1.49	0.53	+/-1.49	78.4	+/-1.5	6.4	+/-1.5	5.8	+/-1.5
				PROF	76.1	+/-0.9	70.7	+/-1.5	57.2	+/-1.5	74.2	+/-1.5	75.2	+/-1.5	57.4	+/-1.5	74.6	+/-1.5	71.4	+/-1.5	72.7	+/-1.5	70.5	+/-1.5	67.4	+/-1.5	2.5	+/-1.5	0.35	+/-1.49	0.66	+/-1.49	0.62	+/-1.49	0.55	+/-1.49	81.4	+/-1.5	6.6	+/-1.5	4.7	+/-1.5
				SAM-T99sec	76.6	+/-1.0	76.8	+/-1.5	50.4	+/-1.5	72.6	+/-1.5	71.7	+/-1.5	61.8	+/-1.5	74.7	+/-1.5	71.5	+/-1.5	76.7	+/-1.5	65.8	+/-1.5	66.1	+/-1.5	1.9	+/-1.5	0.36	+/-1.49	0.67	+/-1.49	0.63	+/-1.49	0.54	+/-1.49	80.4	+/-1.5	6.2	+/-1.5	5.1	+/-1.5
				SSpro	76.3	+/-1.0	75.4	+/-1.5	49.5	+/-1.5	76.9	+/-1.5	73.3	+/-1.5	59.2	+/-1.5	74.2	+/-1.5	70.4	+/-1.5	77.1	+/-1.5	65.3	+/-1.5	67.1	+/-1.5	2.3	+/-1.5	0.36	+/-1.49	0.69	+/-1.49	0.62	+/-1.49	0.55	+/-1.49	80.4	+/-1.5	6.0	+/-1.5	5.8	+/-1.5
common 1	102	dssp	3	PHDpsi	74.9	+/-0.8	70.9	+/-1.5	51.5	+/-1.5	73.0	+/-1.5	70.7	+/-1.5	56.6	+/-1.5	72.7	+/-1.5	69.3	+/-1.5	72.5	+/-1.5	65.6	+/-1.5	64.4	+/-1.5	2.7	+/-1.5	0.24	+/-1.49	0.64	+/-1.49	0.59	+/-1.49	0.52	+/-1.49	81.4	+/-1.5	6.2	+/-1.5	4.9	+/-1.5
common 1	102	dssp	4	PHD	72.3	+/-0.9	69.1	+/-1.5	52.6	+/-1.5	69.5	+/-1.5	69.1	+/-1.5	52.4	+/-1.5	71.7	+/-1.5	67.9	+/-1.5	70.7	+/-1.5	65.4	+/-1.5	63.2	+/-1.5	3.6	+/-1.5	0.21	+/-1.49	0.61	+/-1.49	0.58	+/-1.49	0.49	+/-1.49	76.5	+/-1.5	7.6	+/-1.5	5.8	+/-1.5
common 1	102	dssp	5	PSSP	64.0	+/-1.0	57.5	+/-1.5	48.1	+/-1.5	65.5	+/-1.5	63.4	+/-1.5	43.6	+/-1.5	64.5	+/-1.5	59.0	+/-1.5	59.0	+/-1.5	60.7	+/-1.5	58.3	+/-1.5	6.1	+/-1.5	0.20	+/-1.49	0.48	+/-1.49	0.46	+/-1.49	0.38	+/-1.49	73.5	+/-1.5	9.4	+/-1.5	7.7	+/-1.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 2			Sorted alphabetically for identical ranks!		MORE SCORES
common 2	113	dssp	1	EVAjury_sec3	78.3	+/-0.9	75.3	+/-2.6	55.4	+/-2.9	76.7	+/-1.2	73.7	+/-2.6	59.3	+/-3.0	76.8	+/-1.0	73.4	+/-1.3	76.8	+/-2.3	69.8	+/-2.6	69.9	+/-1.5	2.3	+/-0.3	0.39	+/-0.01	0.68	+/-0.02	0.63	+/-0.02	0.58	+/-0.01	88.5	+/-3.0	5.3	+/-0.7	3.9	+/-0.5
				EVAjury_sec4	77.7	+/-0.9	75.3	+/-2.6	52.7	+/-2.8	77.2	+/-1.2	74.3	+/-2.6	61.2	+/-3.0	75.5	+/-1.0	73.0	+/-1.3	77.1	+/-2.3	69.2	+/-2.5	68.8	+/-1.4	2.0	+/-0.2	0.38	+/-0.01	0.69	+/-0.02	0.64	+/-0.02	0.57	+/-0.01	81.4	+/-3.7	5.5	+/-0.7	4.6	+/-0.5
				EVAjury_sec5	78.2	+/-0.9	75.7	+/-2.6	52.8	+/-2.8	77.3	+/-1.3	74.9	+/-2.5	62.7	+/-3.1	75.8	+/-1.0	73.4	+/-1.3	77.8	+/-2.2	69.3	+/-2.5	69.1	+/-1.5	1.8	+/-0.2	0.39	+/-0.02	0.69	+/-0.02	0.64	+/-0.02	0.57	+/-0.02	83.2	+/-3.5	5.4	+/-0.7	4.6	+/-0.5
				EVAjury_sec6	78.3	+/-0.9	75.0	+/-2.6	52.4	+/-2.7	77.9	+/-1.3	75.4	+/-2.5	63.1	+/-3.1	75.7	+/-1.0	72.7	+/-1.3	76.1	+/-2.3	69.2	+/-2.5	69.2	+/-1.5	1.8	+/-0.2	0.39	+/-0.01	0.69	+/-0.02	0.64	+/-0.02	0.58	+/-0.01	82.3	+/-3.6	5.5	+/-0.7	4.6	+/-0.5
				PSIpred	77.5	+/-0.9	74.8	+/-2.6	54.4	+/-2.9	76.7	+/-1.1	73.2	+/-2.7	58.3	+/-3.0	75.9	+/-1.0	73.9	+/-1.3	78.3	+/-2.4	68.4	+/-2.6	70.2	+/-1.3	2.4	+/-0.3	0.39	+/-0.02	0.67	+/-0.02	0.62	+/-0.03	0.57	+/-0.01	85.0	+/-3.4	5.1	+/-0.6	4.5	+/-0.5
common 2	113	dssp	2	JPRED	75.6	+/-0.8	66.0	+/-2.8	45.9	+/-2.6	81.6	+/-1.3	72.8	+/-3.0	61.0	+/-3.1	69.7	+/-1.1	69.3	+/-1.4	69.1	+/-2.6	64.5	+/-2.6	67.8	+/-1.6	2.1	+/-0.3	0.34	+/-0.01	0.66	+/-0.02	0.61	+/-0.02	0.53	+/-0.01	76.1	+/-4.0	6.7	+/-0.7	5.9	+/-0.5
				PROF	76.2	+/-0.9	70.5	+/-2.7	57.9	+/-2.8	74.2	+/-1.3	74.5	+/-2.6	57.5	+/-2.9	74.9	+/-1.1	72.0	+/-1.3	72.5	+/-2.4	71.7	+/-2.3	67.9	+/-1.5	2.5	+/-0.3	0.35	+/-0.01	0.66	+/-0.02	0.63	+/-0.02	0.55	+/-0.01	78.8	+/-3.9	6.3	+/-0.8	4.6	+/-0.5
				SSpro	76.2	+/-0.9	74.7	+/-2.5	50.4	+/-2.7	76.6	+/-1.2	72.6	+/-2.6	59.4	+/-3.1	74.4	+/-1.1	70.8	+/-1.5	76.1	+/-2.2	66.8	+/-2.5	67.5	+/-1.5	2.4	+/-0.3	0.36	+/-0.01	0.67	+/-0.02	0.63	+/-0.02	0.55	+/-0.02	80.5	+/-3.7	5.9	+/-0.7	5.5	+/-0.6
common 2	113	dssp	3	PHDpsi	74.7	+/-0.8	70.1	+/-2.7	52.3	+/-2.8	73.1	+/-1.3	70.2	+/-2.7	56.8	+/-2.9	72.9	+/-1.0	69.5	+/-1.2	71.7	+/-2.5	67.0	+/-2.5	64.9	+/-1.5	3.0	+/-0.4	0.25	+/-0.07	0.64	+/-0.02	0.60	+/-0.02	0.52	+/-0.01	77.9	+/-3.9	6.3	+/-0.7	5.1	+/-0.6
common 2	113	dssp	4	PHD	72.1	+/-0.9	68.3	+/-2.7	53.1	+/-2.6	69.5	+/-1.4	68.5	+/-2.7	53.0	+/-2.7	72.0	+/-1.2	68.3	+/-1.2	70.0	+/-2.4	66.6	+/-2.4	63.8	+/-1.4	3.9	+/-0.4	0.22	+/-0.07	0.59	+/-0.02	0.59	+/-0.02	0.49	+/-0.01	74.3	+/-4.1	7.7	+/-0.8	6.0	+/-0.6
common 2	113	dssp	5	PSSP	63.7	+/-1.0	57.2	+/-2.4	48.1	+/-2.4	65.4	+/-1.1	63.1	+/-2.7	43.9	+/-2.5	64.7	+/-1.3	59.1	+/-1.2	58.7	+/-2.3	61.6	+/-2.3	58.3	+/-1.3	6.4	+/-0.5	0.20	+/-0.01	0.47	+/-0.02	0.47	+/-0.03	0.38	+/-0.01	71.7	+/-4.3	9.8	+/-0.9	7.8	+/-0.7

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 3			Sorted alphabetically for identical ranks!		MORE SCORES
common 3	167	dssp	1	EVAjury_sec3	78.1	+/-0.7	74.1	+/-2.1	54.7	+/-2.5	77.0	+/-1.0	74.2	+/-2.2	58.1	+/-2.5	76.2	+/-0.8	73.0	+/-1.1	75.8	+/-1.9	71.0	+/-2.0	70.0	+/-1.2	2.2	+/-0.2	0.39	+/-0.01	0.68	+/-0.02	0.65	+/-0.02	0.58	+/-0.01	85.0	+/-2.8	5.3	+/-0.5	4.1	+/-0.4
				EVAjury_sec4	77.8	+/-0.7	74.9	+/-2.1	52.9	+/-2.3	77.4	+/-0.9	74.8	+/-2.1	60.1	+/-2.5	75.6	+/-0.8	73.3	+/-1.0	77.0	+/-1.8	71.3	+/-1.9	69.6	+/-1.1	2.0	+/-0.2	0.38	+/-0.01	0.70	+/-0.02	0.65	+/-0.02	0.57	+/-0.01	80.8	+/-3.1	5.5	+/-0.5	4.5	+/-0.4
				PSIpred	77.1	+/-0.7	73.4	+/-2.1	53.5	+/-2.4	76.6	+/-0.9	73.8	+/-2.2	56.5	+/-2.5	75.2	+/-0.9	72.9	+/-1.1	76.9	+/-1.9	69.6	+/-2.1	69.6	+/-1.1	2.3	+/-0.3	0.38	+/-0.01	0.67	+/-0.02	0.64	+/-0.02	0.56	+/-0.01	80.8	+/-3.1	5.2	+/-0.5	4.6	+/-0.4
common 3	167	dssp	2	PROF	76.0	+/-0.7	70.5	+/-2.2	56.4	+/-2.4	74.4	+/-1.0	74.1	+/-2.1	56.1	+/-2.4	74.6	+/-0.9	71.9	+/-1.0	73.0	+/-2.0	72.3	+/-1.8	68.0	+/-1.2	2.5	+/-0.3	0.35	+/-0.01	0.66	+/-0.02	0.64	+/-0.02	0.55	+/-0.01	82.0	+/-3.0	6.1	+/-0.6	5.1	+/-0.4
				SSpro	76.4	+/-0.7	74.2	+/-2.1	50.5	+/-2.2	76.8	+/-1.0	73.1	+/-2.1	58.3	+/-2.6	74.6	+/-0.9	71.3	+/-1.1	75.9	+/-1.8	68.8	+/-2.0	68.3	+/-1.2	2.4	+/-0.2	0.36	+/-0.01	0.68	+/-0.02	0.64	+/-0.02	0.56	+/-0.01	80.8	+/-3.1	6.0	+/-0.6	5.2	+/-0.4
common 3	167	dssp	3	JPRED	75.3	+/-0.7	64.9	+/-2.2	45.1	+/-2.2	82.3	+/-1.0	73.4	+/-2.4	59.9	+/-2.7	69.4	+/-0.9	69.2	+/-1.2	69.0	+/-2.1	65.9	+/-2.1	68.6	+/-1.3	2.3	+/-0.3	0.34	+/-0.01	0.66	+/-0.02	0.62	+/-0.02	0.54	+/-0.01	73.7	+/-3.4	7.4	+/-0.6	5.8	+/-0.4
				PHDpsi	74.8	+/-0.7	70.0	+/-2.2	51.1	+/-2.3	73.3	+/-1.1	71.2	+/-2.2	55.5	+/-2.5	73.2	+/-0.8	69.6	+/-1.0	71.8	+/-2.0	68.0	+/-2.0	65.4	+/-1.3	2.9	+/-0.3	0.28	+/-0.05	0.64	+/-0.02	0.61	+/-0.02	0.52	+/-0.01	77.8	+/-3.2	6.4	+/-0.6	5.2	+/-0.4
common 3	167	dssp	4	PHD	71.9	+/-0.8	67.6	+/-2.2	51.0	+/-2.2	69.8	+/-1.2	68.0	+/-2.2	51.5	+/-2.3	72.0	+/-1.0	67.7	+/-1.1	69.6	+/-2.0	66.8	+/-2.0	63.5	+/-1.3	4.0	+/-0.3	0.24	+/-0.05	0.59	+/-0.02	0.59	+/-0.02	0.49	+/-0.01	74.8	+/-3.4	7.7	+/-0.7	5.9	+/-0.5
common 3	167	dssp	5	PSSP	63.8	+/-0.8	57.1	+/-2.0	46.1	+/-2.1	66.0	+/-0.9	62.9	+/-2.2	42.9	+/-2.1	64.4	+/-1.0	59.2	+/-1.0	59.2	+/-1.9	62.0	+/-2.0	59.1	+/-1.2	6.5	+/-0.4	0.19	+/-0.01	0.46	+/-0.02	0.47	+/-0.02	0.38	+/-0.01	70.7	+/-3.5	9.8	+/-0.7	7.5	+/-0.5

subset	nprot	sots	rank	method	Q3	ERRsigQ3	Q3H%o	ERRsigQ3H%o	Q3H%p	ERRsigQ3H%p	Q3E%o	ERRsigQ3E%o	Q3E%p	ERRsigQ3E%p	Q3L%o	ERRsigQ3L%o	Q3L%p	ERRsigQ3L%p	sov	ERRsigsov	sovH	ERRsigsovH	sovE	ERRsigsovE	sovL	ERRsigsovL	BAD	ERRsigBAD	info	ERRsiginfo	corrH	ERRsigcorrH	corrE	ERRsigcorrE	corrL	ERRsigcorrL	class	ERRsigclass	contDH	ERRsigcontDH	contDE	ERRsigcontDE
Set 4			Sorted alphabetically for identical ranks!		MORE SCORES
common 4	244	dssp	1	EVAjury_sec3	78.0	+/-0.6	75.0	+/-1.6	54.0	+/-2.0	76.5	+/-0.8	75.2	+/-1.7	57.2	+/-2.1	75.5	+/-0.7	73.4	+/-0.9	77.0	+/-1.5	72.3	+/-1.6	70.0	+/-1.0	2.2	+/-0.2	0.38	+/-0.01	0.68	+/-0.01	0.66	+/-0.02	0.58	+/-0.01	83.6	+/-2.4	5.2	+/-0.4	3.9	+/-0.3
common 4	244	dssp	2	PROF	76.2	+/-0.6	71.6	+/-1.7	55.7	+/-2.0	74.3	+/-0.8	75.8	+/-1.7	55.1	+/-2.0	74.4	+/-0.8	72.7	+/-0.9	74.7	+/-1.5	73.7	+/-1.5	68.5	+/-1.0	2.6	+/-0.2	0.35	+/-0.01	0.67	+/-0.01	0.66	+/-0.01	0.55	+/-0.01	79.9	+/-2.6	6.2	+/-0.5	4.9	+/-0.4
				PSIpred	77.1	+/-0.6	74.4	+/-1.7	52.8	+/-2.0	76.1	+/-0.8	74.6	+/-1.7	55.8	+/-2.1	74.4	+/-0.8	72.9	+/-0.9	77.4	+/-1.5	70.9	+/-1.7	69.6	+/-0.9	2.3	+/-0.2	0.38	+/-0.01	0.67	+/-0.01	0.65	+/-0.02	0.56	+/-0.01	79.1	+/-2.6	5.3	+/-0.4	4.3	+/-0.3
common 4	244	dssp	3	PHDpsi	74.8	+/-0.6	71.5	+/-1.7	50.3	+/-1.9	72.9	+/-0.9	72.9	+/-1.7	54.4	+/-2.1	72.4	+/-0.8	70.3	+/-0.8	74.0	+/-1.5	69.0	+/-1.6	65.4	+/-1.0	2.9	+/-0.2	0.29	+/-0.03	0.64	+/-0.01	0.62	+/-0.02	0.52	+/-0.01	77.9	+/-2.7	6.4	+/-0.5	5.0	+/-0.4
common 4	244	dssp	4	PHD	72.0	+/-0.6	68.9	+/-1.8	50.1	+/-1.9	69.3	+/-1.0	69.5	+/-1.7	50.8	+/-2.0	71.3	+/-0.9	68.1	+/-0.8	70.8	+/-1.6	67.8	+/-1.6	63.4	+/-1.0	3.9	+/-0.3	0.26	+/-0.03	0.59	+/-0.01	0.60	+/-0.02	0.49	+/-0.01	75.8	+/-2.7	7.8	+/-0.5	5.6	+/-0.4

All results

Last update: Dec 29, 2000
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva
WWW mirrors: ../doc/mirrors.html

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