EVA: Detailed information for proteins added on: 2001_09_26

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_09_26	1gd7	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RNA BINDING PROTEIN	MOLECULE: CSAA PROTEIN; CHAIN: A, B, C, D; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA;	T.SHIBATA,Y.INOUE,D.G.VASSYLYEV,S.KAWAGUCHI,S.YOKOYAMA, J.MULLER,D.LINDE,S.KURAMITSU	1gd7	2001_09_26
2001_09_26	1gd8	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	RIBOSOME	MOLECULE: 50S RIBOSOMAL PROTEIN L17; CHAIN: A, B, C, D, E, F, G, H, I; ENGINEERED: YES	THERMUS THERMOPHILUS; BACTERIA;	D.G.VASSYLYEV,M.SHIROUZU,T.WADA,S.YOKOYAMA	1gd8	2001_09_26
2001_09_26	1jma	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	VIRUS/VIRAL PROTEIN	MOLECULE: HERPESVIRUS ENTRY MEDIATOR; CHAIN: B; FRAGMENT: HVEA-162; ENGINEERED: YES; MUTATION: YES; MOLECULE: GLYCOPROTEIN D; CHAIN: A; FRAGMENT: GD-285; ENGINEERED: YES; MUTATION: YES	HERPES SIMPLEX VIRUS 1; VIRUS; HOMO SAPIENS; HUMAN;	A.CARFI,S.H.WILLIS,J.C.WHITBECK,C.KRUMMENACKER,G.H.COHEN, R.J.EISENBERG,D.C.WILEY	1jma	2001_09_26
2001_09_26	1jzt	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	STRUCTURAL GENOMICS, UNKNOWN FUNCTION	MOLECULE: HYPOTHETICAL 27.5 KDA PROTEIN IN SPX19-GCR2 INTERGENIC REGION; CHAIN: A, B; ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; BAKER'S YEAST; GENE: YNL200C;	J.-S.JIANG,N.O.MANNING	1jzt	2001_09_26
2001_09_26	1jr3	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: DNA POLYMERASE III SUBUNIT GAMMA; CHAIN: A, B, C; EC: 2.7.7.7; ENGINEERED: YES; MOLECULE: DNA POLYMERASE III, DELTA SUBUNIT; CHAIN: D; EC: 2.7.7.7; ENGINEERED: YES; MOLECULE: DNA POLYMERASE III, DELTA' SUBUNIT; CHAIN: E; EC: 2.7.7.7; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA;	D.JERUZALMI,M.O'DONNELL,J.KURIYAN	1jr3	2001_09_26
2001_09_26	1i9g	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: HYPOTHETICAL PROTEIN RV2118C; CHAIN: A; ENGINEERED: YES	MYCOBACTERIUM TUBERCULOSIS; BACTERIA; GENE: RV2118C;	A.GUPTA,P.H.KUMAR,T.K.DINESHKUMAR,U.VARSHNEY,H.S.SUBRAMANYA	1i9g	2001_09_26
2001_09_26	1jnx	X	pdb_ascii	dssp	fasta	psi_ascii	psi_html	GENE REGULATION	MOLECULE: BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN; CHAIN: X; FRAGMENT: RESIDUES 1646-1859; SYNONYM: BRCA1; BREAST CANCER 1, EARLY ONSET; BREAST/OVARIAN CANCER SUSCEPTIBILITY PROTEIN BRCA1; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: BRCA1;	R.S.WILLIAMS,R.GREEN,J.N.M.GLOVER	1jnx	2001_09_26
2001_09_26	1jr3	D	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TRANSFERASE	MOLECULE: DNA POLYMERASE III SUBUNIT GAMMA; CHAIN: A, B, C; EC: 2.7.7.7; ENGINEERED: YES; MOLECULE: DNA POLYMERASE III, DELTA SUBUNIT; CHAIN: D; EC: 2.7.7.7; ENGINEERED: YES; MOLECULE: DNA POLYMERASE III, DELTA' SUBUNIT; CHAIN: E; EC: 2.7.7.7; ENGINEERED: YES	ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA; ESCHERICHIA COLI; BACTERIA;	D.JERUZALMI,M.O'DONNELL,J.KURIYAN	1jr3	2001_09_26

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field