EVA: Detailed information for proteins added on: 2001_08_15

Note

not all PDB files correspond to a prediction. Instead, predictions are restricted by the following criteria:

Ab initio prediction:
no protein with significant sequence similarity to a PDB protein already known is listed.
Comparative modelling:
ONLY proteins with significant sequence similarity to known PDB proteins are listed.
Threading:
ONLY proteins which are structurally similar to known PDB proteins are listed
jump to notations used

date	id	chains	PDB ASCII	DSSP ASCII	FASTA ASCII	PSI-Blast ASCII	PSI-Blast HTML	PDB header	PDB compnd	PDB source	PDB author	id	date
2001_08_15	1e6f	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	MIR-RECEPTOR	MOLECULE: MANNOSE-6-PHOSPHATE RECEPTOR; CHAIN: A, B; SYNONYM: MIR-RECEPTOR; ENGINEERED: YES; FRAGMENT: IGF-II-BINDING DOMAIN, REPEAT 11 RESIDUES 1508-1650	HOMO SAPIENS; HUMAN; CELL_LINE: BHK-21; ORGAN: KIDNEY; CELL: FIBROBLAST; CELLULAR_LOCATION: LYSOSOME;	VON K.R.RAJASHANKAR BUELOW,M.DAUTER,Z.DAUTER,S.GRIMME, B.SCHMIDT,K.VON FIGURA,I.USON	1e6f	2001_08_15
2001_08_15	1jeq	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: ATP-DEPENDENT DNA HELICASE II, 70 KDA SUBUNIT; CHAIN: A; SYNONYM: KU70; ENGINEERED: YES; MOLECULE: ATP-DEPENDENT DNA HELICASE II, 80 KDA SUBUNIT; CHAIN: B; SYNONYM: KU80; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: KU70; HOMO SAPIENS; HUMAN; GENE: KU80;	J.R.WALKER,R.A.CORPINA,J.GOLDBERG	1jeq	2001_08_15
2001_08_15	1h7y	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	TUMOR-ASSOCIATED PROTEIN	MOLECULE: TRANSLATIONALLY CONTROLLED TUMOR PROTEIN; CHAIN: A; SYNONYM: TCTP, P23FYP; ENGINEERED: YES	SCHIZOSACCHAROMYCES POMBE;	P.THAW,N.J.BAXTER,S.E.SEDELNIKOVA,C.PRICE,J.P.WALTHO, C.J.CRAVEN	1h7y	2001_08_15
2001_08_15	1h75	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	ELECTRON TRANSPORT	MOLECULE:GLUTAREDOXIN-LIKE PROTEIN NRDH; CHAIN: A; ENGINEERED: YES	ESCHERICHIA COLI;	M.STEHR,G.SCHNEIDER,F.ASLUND,A.HOLMGREN,Y.LINDQVIST	1h75	2001_08_15
2001_08_15	1hi9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE (PROTEASE)	MOLECULE: DIPEPTIDE TRANSPORT PROTEIN DPPA; CHAIN: A, B, C, D, E; SYNONYM: DCIAA; ENGINEERED: YES	BACILLUS SUBTILIS; STRAIN: 168; CELLULAR_LOCATION: CYTOPLASM; PLASMID: CHROMOSOME; GENE: DCIAA;	H.REMAUT,C.BOMPARD-GILLES,C.GOFFIN,J.M.FRERE,J.VAN BEEUMEN	1hi9	2001_08_15
2001_08_15	1ipg	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: BEM1 PROTEIN; CHAIN: A; FRAGMENT: PB1 DOMAIN(RESIDUES 472-551); ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST;	H.TERASAWA,Y.NODA,T.ITO,H.HATANAKA,S.ICHIKAWA,K.OGURA, H.SUMIMOTO,F.INAGAKI	1ipg	2001_08_15
2001_08_15	1ip9	A	pdb_ascii	dssp	fasta	psi_ascii	psi_html	SIGNALING PROTEIN	MOLECULE: BEM1 PROTEIN; CHAIN: A; FRAGMENT: PB1 DOMAIN(RESIDUES 472-551); ENGINEERED: YES	SACCHAROMYCES CEREVISIAE; YEAST;	H.TERASAWA,Y.NODA,T.ITO,H.HATANAKA,S.ICHIKAWA,K.OGURA, H.SUMIMOTO,F.INAGAKI	1ip9	2001_08_15
2001_08_15	1fm2	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	HYDROLASE	MOLECULE: GLUTARYL 7-AMINOCEPHALOSPORANIC ACID ACYLASE; CHAIN: A; FRAGMENT: ALPHA SUBUNIT; SYNONYM: CEPHALOSPORIN ACYLASE; ENGINEERED: YES; MOLECULE: GLUTARYL 7-AMINOCEPHALOSPORANIC ACID ACYLASE; CHAIN: B; FRAGMENT: BETA SUBUNIT; SYNONYM: CEPHALOSPORIN ACYLASE; ENGINEERED: YES	BREVUNDIMONAS DIMINUTA; BACTERIA; BREVUNDIMONAS DIMINUTA; BACTERIA;	Y.KIM,K.H.YOON,Y.KHANG,S.TURLEY,W.G.J.HOL	1fm2	2001_08_15
2001_08_15	1jeq	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN	MOLECULE: ATP-DEPENDENT DNA HELICASE II, 70 KDA SUBUNIT; CHAIN: A; SYNONYM: KU70; ENGINEERED: YES; MOLECULE: ATP-DEPENDENT DNA HELICASE II, 80 KDA SUBUNIT; CHAIN: B; SYNONYM: KU80; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: KU70; HOMO SAPIENS; HUMAN; GENE: KU80;	J.R.WALKER,R.A.CORPINA,J.GOLDBERG	1jeq	2001_08_15
2001_08_15	1jey	B	pdb_ascii	dssp	fasta	psi_ascii	psi_html	DNA BINDING PROTEIN/DNA	MOLECULE: ATP-DEPENDENT DNA HELICASE II, 70 KDA SUBUNIT; CHAIN: A; SYNONYM: KU70; ENGINEERED: YES; MOLECULE: ATP-DEPENDENT DNA HELICASE II, 80 KDA SUBUNIT; CHAIN: B; FRAGMENT: RESIDUES 1-565; SYNONYM: KU80; ENGINEERED: YES; MOLECULE: DNA (5'- D(GPTPTPTPTPTPAPGPTPTPTPAPTPTPGPGPGPCPGP CP*G)-3'); CHAIN: C; ENGINEERED: YES; MOLECULE: DNA (34-MER); CHAIN: D; ENGINEERED: YES	HOMO SAPIENS; HUMAN; GENE: KU70; HOMO SAPIENS; HUMAN; GENE: KU80; SYNTHETIC: YES; SYNTHETIC: YES	J.R.WALKER,R.A.CORPINA,J.GOLDBERG	1jey	2001_08_15

Notations used

date	date of weekly update
id	PDB identifier of protein
chains	PDB chain identifiers of protein (contains links only to sequence unique chains)
PDB ASCII	ASCII (plain text) version of raw PDB file
DSSP ASCII	ASCII (plain text) version of raw DSSP file, i.e. assignment of secondary structure and solvent accessibility for PDB
FASTA ASCII	ASCII version of PDB sequence in FASTA format
PSI-Blast HTML	gzipped version of PSI-BLAST in HTML from MVIEW. WATCH it files may be VERY large!) size of file in brackets)
PSI-Blast ASCII	gzipped version of PSI-BLAST in ASCII (size of file in brackets)
PDB header	PDB 'HEADER' field
PDB compnd	PDB 'COMPND' field
PDB source	PDB 'SOURCE' field
PDB author	PDB 'AUTHOR' field