METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_09 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_09 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_09 | dssp | THIS_month:psum | 75.8 | 75 | 74 | 54 | 58 | 80 | 73 | 71.6 | 77.3 | 63.9 | 73.1 | 2.6 | 0.38 | 0.38 | 0.38 | 0.69 | 0.57 | 0.54 | 85 | 7.1 | 6.0 |
sec | 2002_09 | dssp | 1gxu:A | 83.0 | 85 | 94 | 77 | 90 | 87 | 71 | 96.3 | 100 | 100 | 89 | 0.0 | 0.54 | 0.54 | 0.55 | 0.87 | 0.74 | 0.65 | 100.0 | 2.0 | 5.0 |
sec | 2002_09 | dssp | 1gzs:B | 73.9 | 73 | 95 | 0 | 0 | 89 | 50 | 67.8 | 71 | 0 | 68 | 2.4 | 0.29 | 0.30 | 0.28 | 0.59 | -0.03 | 0.53 | 100.0 | 16.0 | 2.0 |
sec | 2002_09 | dssp | 1h0x:A | 87.6 | 100 | 90 | 81 | 96 | 84 | 75 | 87.9 | 100 | 80 | 90 | 0.0 | 0.68 | 0.69 | 0.68 | 0.92 | 0.81 | 0.70 | 0.0 | 3.0 | 6.0 |
sec | 2002_09 | dssp | 1iya:A | 78.1 | 90 | 86 | 51 | 50 | 80 | 82 | 74.2 | 96 | 41 | 74 | 0.0 | 0.42 | 0.43 | 0.42 | 0.85 | 0.40 | 0.54 | 100.0 | 1.0 | 0.00 |
sec | 2002_09 | dssp | 1klx:A | 92.5 | 90 | 98 | 0 | 0 | 97 | 80 | 98.9 | 100 | 100 | 96 | 0.0 | 0.62 | 0.65 | 0.60 | 0.83 | 1.0 | 0.83 | 100.0 | 6.0 | 0.00 |
sec | 2002_09 | dssp | 1ko6:A | 84.9 | 71 | 95 | 86 | 82 | 89 | 82 | 91.1 | 75 | 93 | 96 | 0.6 | 0.53 | 0.52 | 0.55 | 0.79 | 0.78 | 0.71 | 100.0 | 5.0 | 1.0 |
sec | 2002_09 | dssp | 1koy:A | 72.6 | 70 | 90 | 0 | 0 | 76 | 64 | 70.5 | 80 | 100 | 57 | 4.8 | 0.21 | 0.25 | 0.18 | 0.53 | 1.0 | 0.52 | 0.0 | 14.0 | 8.0 |
sec | 2002_09 | dssp | 1kwg:A | 78.6 | 79 | 85 | 64 | 70 | 83 | 76 | 78.1 | 87 | 66 | 76 | 2.0 | 0.38 | 0.38 | 0.39 | 0.74 | 0.60 | 0.61 | 100.0 | 2.0 | 1.0 |
sec | 2002_09 | dssp | 1l2m:A | 63.6 | 94 | 59 | 37 | 56 | 75 | 68 | 55.0 | 100 | 30 | 71 | 8.4 | 0.28 | 0.29 | 0.28 | 0.69 | 0.22 | 0.44 | 100.0 | 8.0 | 12.0 |
sec | 2002_09 | dssp | 1l8q:A | 86.9 | 91 | 90 | 91 | 81 | 77 | 81 | 80.5 | 80 | 100 | 76 | 0.3 | 0.52 | 0.53 | 0.52 | 0.76 | 0.85 | 0.69 | 100.0 | 0.00 | 0.00 |
sec | 2002_09 | dssp | 1lnw:C | 70.6 | 70 | 81 | 33 | 14 | 74 | 66 | 67.0 | 68 | 33 | 68 | 9.4 | 0.21 | 0.23 | 0.20 | 0.39 | 0.17 | 0.55 | 0.0 | 8.0 | 4.0 |
sec | 2002_09 | dssp | 1lqp:A | 84.3 | 96 | 91 | 68 | 94 | 92 | 74 | 88.8 | 100 | 78 | 91 | 0.7 | 0.59 | 0.59 | 0.60 | 0.92 | 0.71 | 0.70 | 100.0 | 1.0 | 10.0 |
sec | 2002_09 | dssp | 1lrz:A | 82.7 | 95 | 86 | 67 | 86 | 82 | 77 | 78.9 | 91 | 74 | 72 | 0.9 | 0.53 | 0.53 | 0.54 | 0.86 | 0.68 | 0.66 | 100.0 | 3.0 | 6.0 |
sec | 2002_09 | dssp | 1lv3:A | 75.4 | 25 | 22 | 100 | 50 | 80 | 93 | 78.7 | 12 | 90 | 98 | 4.6 | 0.31 | 0.35 | 0.28 | 0.12 | 0.67 | 0.51 | 100.0 | 1.0 | 9.0 |
sec | 2002_09 | dssp | 1lv9:A | 68.8 | 88 | 47 | 61 | 73 | 67 | 78 | 62.4 | 100 | 66 | 55 | 1.5 | 0.27 | 0.29 | 0.26 | 0.57 | 0.55 | 0.41 | 100.0 | 12.0 | 4.0 |
sec | 2002_09 | dssp | 1m2o:A | 69.5 | 35 | 100 | 70 | 53 | 79 | 73 | 56.9 | 35 | 49 | 65 | 0.0 | 0.28 | 0.26 | 0.31 | 0.55 | 0.49 | 0.34 | 100.0 | 11.0 | 6.0 |
sec | 2002_09 | dssp | 1m2v:B | 64.4 | 0 | 0 | 40 | 44 | 89 | 67 | 28.1 | 0 | 21 | 35 | 0.0 | 0.11 | 0.07 | 0.16 | 1.0 | 0.33 | 0.08 | 100.0 | 20.0 | 1.0 |
sec | 2002_09 | dssp | 1mgp:A | 78.7 | 92 | 83 | 68 | 78 | 70 | 72 | 76.7 | 89 | 70 | 66 | 2.4 | 0.43 | 0.43 | 0.44 | 0.79 | 0.64 | 0.57 | 100.0 | 4.0 | 3.0 |
sec | 2002_09 | dssp | 1miu:A | 68.9 | 78 | 60 | 71 | 58 | 63 | 80 | 57.1 | 63 | 73 | 51 | 2.3 | 0.25 | 0.26 | 0.24 | 0.55 | 0.56 | 0.44 | 100.0 | 8.0 | 3.0 |
sec | 2002_09 | dssp | 1mm5:A | 52.9 | 94 | 34 | 20 | 100 | 83 | 53 | 37.9 | 100 | 15 | 69 | 11.7 | 0.20 | 0.20 | 0.21 | 0.49 | 0.34 | 0.36 | 100.0 | 17.0 | 40.0 |
sec | 2002_09 | dssp | THIS_month:psum | 75.8 | 75 | 74 | 54 | 58 | 80 | 73 | 71.6 | 77.3 | 63.9 | 73.1 | 2.6 | 0.38 | 0.38 | 0.38 | 0.69 | 0.57 | 0.54 | 85 | 7.1 | 6.0 |
sec | 2002_09 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_09 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |