METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2002_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_09 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_09 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2002_09 | dssp | THIS_month:psum | 74.8 | 86 | 69 | 42 | 57 | 74 | 76 | 71.0 | 82.9 | 61.5 | 66 | 1.9 | 0.35 | 0.34 | 0.36 | 0.64 | 0.67 | 0.52 | 75 | 8.9 | 7.0 |
sec | 2002_09 | dssp | 1iya:A | 76.5 | 88 | 75 | 48 | 57 | 79 | 81 | 71.0 | 98 | 43 | 68 | 0.5 | 0.35 | 0.36 | 0.36 | 0.75 | 0.44 | 0.52 | 100.0 | 4.0 | 2.0 |
sec | 2002_09 | dssp | 1klx:A | 89.5 | 95 | 90 | 0 | 0 | 74 | 87 | 94.7 | 98 | 100 | 84 | 0.0 | 0.46 | 0.44 | 0.48 | 0.73 | 1.0 | 0.73 | 100.0 | 4.0 | 0.00 |
sec | 2002_09 | dssp | 1koy:A | 80.6 | 85 | 85 | 0 | 0 | 71 | 71 | 86.8 | 90 | 100 | 80 | 0.0 | 0.25 | 0.25 | 0.25 | 0.56 | 1.0 | 0.56 | 100.0 | 0.00 | 0.00 |
sec | 2002_09 | dssp | 1kwg:A | 80.0 | 87 | 81 | 65 | 80 | 80 | 78 | 71.8 | 73 | 73 | 69 | 0.7 | 0.43 | 0.43 | 0.44 | 0.76 | 0.66 | 0.61 | 100.0 | 2.0 | 3.0 |
sec | 2002_09 | dssp | 1l2m:A | 69.5 | 100 | 58 | 44 | 76 | 80 | 71 | 64.7 | 100 | 48 | 69 | 5.9 | 0.32 | 0.33 | 0.32 | 0.71 | 0.42 | 0.51 | 100.0 | 10.0 | 16.0 |
sec | 2002_09 | dssp | 1lnw:C | 88.5 | 100 | 86 | 100 | 75 | 62 | 100 | 86.8 | 100 | 90 | 64 | 0.0 | 0.61 | 0.58 | 0.65 | 0.78 | 0.85 | 0.73 | 0.0 | 10.0 | 1.0 |
sec | 2002_09 | dssp | 1lqp:A | 77.6 | 66 | 88 | 74 | 92 | 88 | 64 | 77.5 | 69 | 90 | 69 | 0.0 | 0.45 | 0.44 | 0.47 | 0.70 | 0.74 | 0.57 | 100.0 | 5.0 | 7.0 |
sec | 2002_09 | dssp | 1lrz:A | 79.8 | 93 | 81 | 55 | 85 | 79 | 73 | 79.7 | 93 | 65 | 70 | 5.5 | 0.43 | 0.42 | 0.45 | 0.76 | 0.61 | 0.65 | 0.0 | 6.0 | 9.0 |
sec | 2002_09 | dssp | 1lv3:A | 81.5 | 87 | 58 | 16 | 50 | 88 | 88 | 61.3 | 58 | 16 | 65 | 0.0 | 0.30 | 0.29 | 0.32 | 0.66 | 0.25 | 0.45 | 100.0 | 6.0 | 6.0 |
sec | 2002_09 | dssp | 1m2o:A | 78.6 | 84 | 79 | 65 | 81 | 80 | 76 | 72.4 | 78 | 70 | 68 | 2.2 | 0.40 | 0.40 | 0.41 | 0.72 | 0.66 | 0.61 | 0.0 | 2.0 | 4.0 |
sec | 2002_09 | dssp | 1miu:B | 38.1 | 71 | 18 | 0 | 0 | 34 | 73 | 34.1 | 38 | 0 | 35 | 2.3 | 0.02 | 0.02 | 0.03 | 0.06 | 1.0 | -0.05 | 100.0 | 47.0 | 7.0 |
sec | 2002_09 | dssp | 1mm5:A | 58.2 | 82 | 37 | 37 | 94 | 79 | 53 | 51.7 | 100 | 43 | 51 | 6.4 | 0.20 | 0.20 | 0.20 | 0.48 | 0.43 | 0.34 | 100.0 | 11.0 | 30.0 |
sec | 2002_09 | dssp | THIS_month:psum | 74.8 | 86 | 69 | 42 | 57 | 74 | 76 | 71.0 | 82.9 | 61.5 | 66 | 1.9 | 0.35 | 0.34 | 0.36 | 0.64 | 0.67 | 0.52 | 75 | 8.9 | 7.0 |
sec | 2002_09 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_09 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |