METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 103 |
NWEEKS : | 20 |
NOTE 1 : | here ALL results obtained for Prospect in month 2002_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_09 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_09 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
sec | 2002_09 | dssp | THIS_month:psum | 71.2 | 68 | 72 | 45 | 57 | 79 | 66 | 64.5 | 72 | 54.0 | 64.4 | 1.9 | 0.31 | 0.30 | 0.32 | 0.69 | 0.49 | 0.44 | 90.9 | 8.9 | 6.6 |
sec | 2002_09 | dssp | 1gxu:A | 69.3 | 85 | 94 | 55 | 74 | 74 | 54 | 74.7 | 100 | 65 | 68 | 0.0 | 0.40 | 0.40 | 0.41 | 0.87 | 0.44 | 0.39 | 100.0 | 2.0 | 10.0 |
sec | 2002_09 | dssp | 1gzs:B | 73.3 | 72 | 95 | 0 | 0 | 89 | 47 | 64.9 | 68 | 0 | 65 | 1.2 | 0.27 | 0.28 | 0.27 | 0.58 | -0.02 | 0.50 | 100.0 | 16.0 | 3.0 |
sec | 2002_09 | dssp | 1ko6:A | 77.6 | 62 | 86 | 80 | 76 | 82 | 75 | 80.7 | 59 | 83 | 88 | 0.6 | 0.39 | 0.38 | 0.41 | 0.68 | 0.68 | 0.56 | 100.0 | 5.0 | 1.0 |
sec | 2002_09 | dssp | 1koy:A | 85.5 | 82 | 94 | 0 | 0 | 90 | 73 | 95.5 | 97 | 100 | 91 | 0.0 | 0.41 | 0.42 | 0.40 | 0.70 | 1.0 | 0.70 | 100.0 | 8.0 | 0.00 |
sec | 2002_09 | dssp | 1kwg:A | 76.7 | 78 | 83 | 63 | 71 | 80 | 74 | 77.4 | 87 | 67 | 74 | 1.3 | 0.36 | 0.36 | 0.37 | 0.71 | 0.60 | 0.56 | 100.0 | 2.0 | 2.0 |
sec | 2002_09 | dssp | 1l2m:A | 61.0 | 82 | 73 | 48 | 56 | 64 | 60 | 60.7 | 87 | 49 | 64 | 1.6 | 0.25 | 0.25 | 0.25 | 0.73 | 0.26 | 0.25 | 100.0 | 1.0 | 5.0 |
sec | 2002_09 | dssp | 1lrz:A | 79.3 | 97 | 77 | 60 | 87 | 77 | 76 | 76.0 | 91 | 71 | 67 | 2.8 | 0.46 | 0.46 | 0.47 | 0.79 | 0.64 | 0.62 | 0.0 | 8.0 | 8.0 |
sec | 2002_09 | dssp | 1m2o:A | 72.6 | 35 | 100 | 70 | 60 | 84 | 74 | 57.5 | 35 | 50 | 66 | 0.0 | 0.31 | 0.28 | 0.34 | 0.55 | 0.55 | 0.40 | 100.0 | 11.0 | 3.0 |
sec | 2002_09 | dssp | 1m2v:B | 65.8 | 0 | 0 | 40 | 50 | 91 | 67 | 17.2 | 0 | 16 | 22 | 0.0 | 0.13 | 0.07 | 0.19 | 1.0 | 0.37 | 0.11 | 100.0 | 20.0 | 2.0 |
sec | 2002_09 | dssp | 1miu:A | 69.7 | 83 | 61 | 61 | 57 | 65 | 81 | 55.8 | 68 | 62 | 49 | 2.8 | 0.25 | 0.26 | 0.25 | 0.58 | 0.50 | 0.46 | 100.0 | 9.0 | 1.0 |
sec | 2002_09 | dssp | 1mm5:A | 52.4 | 82 | 31 | 23 | 100 | 82 | 52 | 49.4 | 100 | 32 | 55 | 11.1 | 0.17 | 0.17 | 0.18 | 0.42 | 0.36 | 0.33 | 100.0 | 16.0 | 38.0 |
sec | 2002_09 | dssp | THIS_month:psum | 71.2 | 68 | 72 | 45 | 57 | 79 | 66 | 64.5 | 72 | 54.0 | 64.4 | 1.9 | 0.31 | 0.30 | 0.32 | 0.69 | 0.49 | 0.44 | 90.9 | 8.9 | 6.6 |
sec | 2002_09 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_09 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |