METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2002_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_09 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_09 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2002_09 | dssp | THIS_month:psum | 71.4 | 63 | 73 | 48 | 71 | 85 | 65 | 61.3 | 70 | 54.9 | 60.4 | 2.1 | 0.32 | 0.30 | 0.35 | 0.67 | 0.48 | 0.47 | 81.8 | 8.5 | 8.2 |
sec | 2002_09 | dssp | 1gxu:A | 77.3 | 80 | 94 | 66 | 88 | 87 | 62 | 78.4 | 100 | 67 | 80 | 0.0 | 0.47 | 0.46 | 0.48 | 0.83 | 0.64 | 0.56 | 100.0 | 3.0 | 10.0 |
sec | 2002_09 | dssp | 1gzs:B | 65.5 | 59 | 100 | 0 | 0 | 97 | 45 | 69.7 | 75 | 0 | 66 | 6.6 | 0.28 | 0.32 | 0.26 | 0.54 | -0.06 | 0.52 | 0.0 | 29.0 | 2.0 |
sec | 2002_09 | dssp | 1kwg:A | 78.7 | 74 | 91 | 65 | 76 | 87 | 72 | 73.7 | 82 | 70 | 69 | 0.3 | 0.42 | 0.41 | 0.44 | 0.75 | 0.64 | 0.59 | 100.0 | 6.0 | 2.0 |
sec | 2002_09 | dssp | 1l2m:A | 64.4 | 58 | 71 | 42 | 63 | 83 | 63 | 64.7 | 58 | 62 | 67 | 5.0 | 0.21 | 0.21 | 0.23 | 0.59 | 0.30 | 0.41 | 100.0 | 2.0 | 12.0 |
sec | 2002_09 | dssp | 1l8q:A | 82.9 | 82 | 92 | 87 | 77 | 83 | 70 | 78.2 | 79 | 100 | 71 | 0.9 | 0.44 | 0.46 | 0.43 | 0.69 | 0.81 | 0.64 | 100.0 | 6.0 | 0.00 |
sec | 2002_09 | dssp | 1lv9:A | 81.2 | 88 | 80 | 66 | 80 | 86 | 82 | 75.7 | 100 | 77 | 71 | 0.0 | 0.44 | 0.44 | 0.45 | 0.81 | 0.63 | 0.61 | 100.0 | 1.0 | 4.0 |
sec | 2002_09 | dssp | 1m2o:A | 69.5 | 29 | 100 | 30 | 66 | 94 | 67 | 36.6 | 35 | 41 | 35 | 0.0 | 0.23 | 0.16 | 0.30 | 0.50 | 0.36 | 0.33 | 100.0 | 12.0 | 11.0 |
sec | 2002_09 | dssp | 1m2v:B | 69.9 | 0 | 0 | 30 | 100 | 100 | 68 | 20.3 | 0 | 30 | 24 | 0.0 | 0.30 | 0.10 | 0.51 | 1.0 | 0.51 | 0.28 | 100.0 | 20.0 | 9.0 |
sec | 2002_09 | dssp | 1mgp:A | 76.2 | 85 | 82 | 62 | 80 | 76 | 66 | 75.1 | 91 | 62 | 67 | 2.9 | 0.38 | 0.38 | 0.39 | 0.73 | 0.62 | 0.55 | 0.0 | 0.00 | 5.0 |
sec | 2002_09 | dssp | 1miu:A | 66.9 | 74 | 59 | 62 | 57 | 64 | 76 | 54.2 | 56 | 65 | 50 | 2.0 | 0.21 | 0.22 | 0.21 | 0.51 | 0.51 | 0.39 | 100.0 | 7.0 | 1.0 |
sec | 2002_09 | dssp | 1mm5:A | 53.5 | 64 | 35 | 27 | 96 | 83 | 49 | 48.0 | 94 | 30 | 65 | 5.8 | 0.15 | 0.15 | 0.16 | 0.40 | 0.37 | 0.28 | 100.0 | 8.0 | 35.0 |
sec | 2002_09 | dssp | THIS_month:psum | 71.4 | 63 | 73 | 48 | 71 | 85 | 65 | 61.3 | 70 | 54.9 | 60.4 | 2.1 | 0.32 | 0.30 | 0.35 | 0.67 | 0.48 | 0.47 | 81.8 | 8.5 | 8.2 |
sec | 2002_09 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_09 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |