METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 672 |
NWEEKS : | 29 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2002_09 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_09 | dssp | ALL_proteins:psum | 82.9 | 86 | 87 | 77 | 85 | 85 | 80 | 78.7 | 80.5 | 77.7 | 77.7 | 1.5 | 0.53 | 0.53 | 0.53 | 0.79 | 0.76 | 0.70 | 8601.1 | 4.6 | 4.3 |
sec | 2002_09 | dssp | ALL_proteins:sig | 11.5 | 27 | 28 | 34 | 36 | 13 | 14 | 15.0 | 21.0 | 23.6 | 17.1 | 3.5 | 0.22 | 0.22 | 0.22 | 0.22 | 0.23 | 0.20 | 8521.5 | 6.2 | 6.4 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.44 | 1 | 1 | 1 | 1 | 0.51 | 0.54 | 0.58 | 0.81 | 0.91 | 0.66 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 328.7 | 0.24 | 0.24 |
sec | 2002_09 | dssp | THIS_month:psum | 76.4 | 78 | 77 | 51 | 61 | 81 | 71 | 71.9 | 79.9 | 62.1 | 71.0 | 2.0 | 0.39 | 0.38 | 0.39 | 0.72 | 0.63 | 0.54 | 85 | 6.8 | 4.9 |
sec | 2002_09 | dssp | 1gxu:A | 72.7 | 80 | 85 | 69 | 78 | 70 | 61 | 71.9 | 100 | 60 | 70 | 1.1 | 0.37 | 0.37 | 0.37 | 0.77 | 0.57 | 0.45 | 100.0 | 1.0 | 4.0 |
sec | 2002_09 | dssp | 1gzs:B | 72.7 | 72 | 96 | 12 | 9 | 87 | 51 | 65.0 | 64 | 12 | 78 | 4.8 | 0.27 | 0.30 | 0.25 | 0.59 | 0.05 | 0.53 | 0.0 | 18.0 | 1.0 |
sec | 2002_09 | dssp | 1h0x:A | 92.1 | 92 | 96 | 91 | 97 | 92 | 82 | 89.6 | 100 | 80 | 97 | 0.0 | 0.73 | 0.74 | 0.73 | 0.91 | 0.90 | 0.81 | 100.0 | 1.0 | 2.0 |
sec | 2002_09 | dssp | 1iya:A | 77.0 | 81 | 83 | 51 | 53 | 82 | 80 | 71.5 | 93 | 40 | 71 | 0.5 | 0.36 | 0.36 | 0.36 | 0.77 | 0.43 | 0.53 | 100.0 | 0.00 | 0.00 |
sec | 2002_09 | dssp | 1klx:A | 90.2 | 88 | 97 | 0 | 0 | 94 | 77 | 97.5 | 100 | 100 | 91 | 0.0 | 0.54 | 0.56 | 0.52 | 0.78 | 1.0 | 0.78 | 100.0 | 6.0 | 0.00 |
sec | 2002_09 | dssp | 1ko6:A | 83.6 | 78 | 92 | 80 | 81 | 88 | 81 | 76.7 | 76 | 89 | 71 | 0.6 | 0.50 | 0.49 | 0.51 | 0.81 | 0.73 | 0.68 | 100.0 | 3.0 | 0.00 |
sec | 2002_09 | dssp | 1koy:A | 74.2 | 70 | 93 | 0 | 0 | 80 | 68 | 84.1 | 82 | 100 | 86 | 6.4 | 0.27 | 0.32 | 0.22 | 0.57 | 1.0 | 0.59 | 0.0 | 16.0 | 9.0 |
sec | 2002_09 | dssp | 1kwg:A | 78.6 | 82 | 84 | 60 | 74 | 83 | 75 | 75.0 | 84 | 70 | 70 | 1.3 | 0.39 | 0.39 | 0.40 | 0.74 | 0.60 | 0.60 | 100.0 | 1.0 | 3.0 |
sec | 2002_09 | dssp | 1l2m:A | 72.0 | 100 | 77 | 57 | 70 | 75 | 71 | 67.2 | 100 | 53 | 70 | 1.6 | 0.37 | 0.38 | 0.37 | 0.85 | 0.44 | 0.47 | 100.0 | 4.0 | 6.0 |
sec | 2002_09 | dssp | 1l8q:A | 85.4 | 88 | 90 | 95 | 79 | 76 | 76 | 73.4 | 71 | 100 | 71 | 0.0 | 0.51 | 0.52 | 0.50 | 0.73 | 0.86 | 0.65 | 100.0 | 1.0 | 1.0 |
sec | 2002_09 | dssp | 1lnw:C | 67.1 | 72 | 75 | 0 | 0 | 62 | 53 | 81.6 | 94 | 0 | 64 | 3.5 | 0.10 | 0.10 | 0.11 | 0.28 | 1.0 | 0.35 | 100.0 | 2.0 | 3.0 |
sec | 2002_09 | dssp | 1lqp:A | 83.6 | 96 | 94 | 64 | 94 | 94 | 72 | 86.9 | 100 | 82 | 83 | 0.7 | 0.62 | 0.62 | 0.64 | 0.94 | 0.68 | 0.70 | 100.0 | 0.00 | 11.0 |
sec | 2002_09 | dssp | 1lrz:A | 80.8 | 92 | 85 | 58 | 87 | 86 | 74 | 71.7 | 84 | 65 | 65 | 2.4 | 0.48 | 0.47 | 0.49 | 0.83 | 0.63 | 0.66 | 0.0 | 2.0 | 9.0 |
sec | 2002_09 | dssp | 1lv3:A | 83.1 | 100 | 53 | 50 | 75 | 84 | 93 | 93.3 | 80 | 54 | 100 | 0.0 | 0.42 | 0.45 | 0.40 | 0.68 | 0.58 | 0.56 | 100.0 | 10.0 | 3.0 |
sec | 2002_09 | dssp | 1lv9:A | 79.7 | 100 | 81 | 66 | 70 | 81 | 83 | 74.2 | 100 | 83 | 67 | 0.0 | 0.47 | 0.48 | 0.46 | 0.88 | 0.56 | 0.58 | 100.0 | 3.0 | 1.0 |
sec | 2002_09 | dssp | 1m2o:A | 69.5 | 29 | 100 | 60 | 57 | 84 | 71 | 59.4 | 35 | 55 | 67 | 0.0 | 0.25 | 0.22 | 0.29 | 0.50 | 0.47 | 0.33 | 100.0 | 12.0 | 1.0 |
sec | 2002_09 | dssp | 1m2v:B | 69.9 | 0 | 0 | 40 | 80 | 97 | 69 | 19.9 | 0 | 26 | 24 | 0.0 | 0.23 | 0.10 | 0.36 | 1.0 | 0.52 | 0.26 | 100.0 | 20.0 | 6.0 |
sec | 2002_09 | dssp | 1mgp:A | 73.3 | 75 | 85 | 75 | 78 | 69 | 58 | 71.4 | 72 | 81 | 61 | 0.0 | 0.39 | 0.40 | 0.40 | 0.68 | 0.69 | 0.42 | 100.0 | 4.0 | 0.00 |
sec | 2002_09 | dssp | 1miu:A | 71.2 | 87 | 62 | 69 | 61 | 63 | 83 | 58.9 | 63 | 63 | 55 | 1.9 | 0.29 | 0.31 | 0.29 | 0.61 | 0.57 | 0.48 | 100.0 | 11.0 | 1.0 |
sec | 2002_09 | dssp | 1mm5:A | 52.9 | 94 | 29 | 23 | 86 | 80 | 58 | 48.9 | 100 | 29 | 60 | 16.4 | 0.17 | 0.18 | 0.17 | 0.44 | 0.28 | 0.41 | 100.0 | 21.0 | 37.0 |
sec | 2002_09 | dssp | THIS_month:psum | 76.4 | 78 | 77 | 51 | 61 | 81 | 71 | 71.9 | 79.9 | 62.1 | 71.0 | 2.0 | 0.39 | 0.38 | 0.39 | 0.72 | 0.63 | 0.54 | 85 | 6.8 | 4.9 |
sec | 2002_09 | dssp | ALL_proteins:psum | 82.9 | 86 | 87 | 77 | 85 | 85 | 80 | 78.7 | 80.5 | 77.7 | 77.7 | 1.5 | 0.53 | 0.53 | 0.53 | 0.79 | 0.76 | 0.70 | 8601.1 | 4.6 | 4.3 |
sec | 2002_09 | dssp | ALL_proteins:sig | 11.5 | 27 | 28 | 34 | 36 | 13 | 14 | 15.0 | 21.0 | 23.6 | 17.1 | 3.5 | 0.22 | 0.22 | 0.22 | 0.22 | 0.23 | 0.20 | 8521.5 | 6.2 | 6.4 |
sec | 2002_09 | dssp | ALL_proteins:errsig | 0.44 | 1 | 1 | 1 | 1 | 0.51 | 0.54 | 0.58 | 0.81 | 0.91 | 0.66 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 328.7 | 0.24 | 0.24 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |