METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_08 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_08 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_08 | dssp | THIS_month:psum | 74.2 | 70 | 65 | 43 | 56 | 73 | 72 | 67.5 | 76.8 | 57.7 | 65.9 | 3.9 | 0.31 | 0.31 | 0.31 | 0.66 | 0.59 | 0.51 | 81.2 | 9 | 6.4 |
sec | 2002_08 | dssp | 1h1j:S | 79.5 | 77 | 95 | 0 | 0 | 82 | 73 | 65.3 | 58 | 100 | 84 | 2.2 | 0.36 | 0.42 | 0.32 | 0.70 | 1.0 | 0.62 | 100.0 | 11.0 | 6.0 |
sec | 2002_08 | dssp | 1htw:A | 79.7 | 86 | 84 | 69 | 82 | 81 | 74 | 87.3 | 94 | 79 | 87 | 2.5 | 0.44 | 0.45 | 0.45 | 0.78 | 0.66 | 0.63 | 100.0 | 0.00 | 4.0 |
sec | 2002_08 | dssp | 1iw4:A | 50.9 | 57 | 15 | 20 | 66 | 57 | 84 | 57.1 | 53 | 20 | 67 | 12.7 | 0.11 | 0.12 | 0.11 | 0.07 | 0.30 | 0.31 | 100.0 | 34.0 | 12.0 |
sec | 2002_08 | dssp | 1jv1:A | 82.1 | 92 | 84 | 0 | 0 | 50 | 70 | 84.7 | 93 | 100 | 57 | 0.0 | 0.20 | 0.18 | 0.22 | 0.48 | 1.0 | 0.48 | 100.0 | 7.0 | 0.00 |
sec | 2002_08 | dssp | 1k4n:A | 71.1 | 90 | 72 | 51 | 93 | 70 | 57 | 66.5 | 86 | 52 | 63 | 3.9 | 0.35 | 0.35 | 0.37 | 0.69 | 0.60 | 0.45 | 0.0 | 8.0 | 15.0 |
sec | 2002_08 | dssp | 1koz:A | 75.0 | 0 | 0 | 50 | 33 | 80 | 88 | 42.9 | 100 | 29 | 45 | 0.0 | 0.05 | 0.07 | 0.05 | 1.0 | 0.25 | 0.25 | 100.0 | 0.00 | 8.0 |
sec | 2002_08 | dssp | 1kr4:A | 76.4 | 100 | 82 | 61 | 90 | 68 | 57 | 74.4 | 98 | 61 | 71 | 1.8 | 0.50 | 0.50 | 0.50 | 0.85 | 0.62 | 0.47 | 100.0 | 7.0 | 12.0 |
sec | 2002_08 | dssp | 1ku0:A | 71.6 | 62 | 90 | 50 | 62 | 87 | 65 | 62.1 | 69 | 50 | 60 | 1.8 | 0.29 | 0.28 | 0.31 | 0.63 | 0.48 | 0.50 | 100.0 | 12.0 | 2.0 |
sec | 2002_08 | dssp | 1l5p:A | 72.0 | 68 | 61 | 50 | 82 | 86 | 72 | 68.7 | 64 | 60 | 74 | 5.3 | 0.27 | 0.26 | 0.28 | 0.55 | 0.53 | 0.55 | 100.0 | 2.0 | 11.0 |
sec | 2002_08 | dssp | 1l7y:A | 78.7 | 57 | 100 | 67 | 76 | 93 | 75 | 72.7 | 63 | 78 | 73 | 3.1 | 0.41 | 0.39 | 0.45 | 0.72 | 0.60 | 0.65 | 100.0 | 8.0 | 3.0 |
sec | 2002_08 | dssp | 1l8d:A | 85.4 | 90 | 96 | 0 | 0 | 76 | 45 | 53.4 | 55 | 0 | 47 | 0.0 | 0.36 | 0.36 | 0.37 | 0.66 | 1.0 | 0.51 | 100.0 | 4.0 | 3.0 |
sec | 2002_08 | dssp | 1lmz:A | 85.6 | 87 | 90 | 25 | 16 | 86 | 85 | 82.3 | 80 | 25 | 87 | 2.1 | 0.44 | 0.46 | 0.44 | 0.75 | 0.18 | 0.74 | 100.0 | 1.0 | 1.0 |
sec | 2002_08 | dssp | 1luz:A | 74.1 | 100 | 48 | 71 | 87 | 66 | 88 | 68.8 | 56 | 69 | 73 | 9.4 | 0.39 | 0.41 | 0.38 | 0.61 | 0.64 | 0.65 | 0.0 | 17.0 | 8.0 |
sec | 2002_08 | dssp | 1lw7:A | 77.3 | 86 | 78 | 78 | 76 | 65 | 75 | 75.8 | 88 | 86 | 59 | 1.1 | 0.38 | 0.38 | 0.38 | 0.66 | 0.73 | 0.53 | 100.0 | 4.0 | 0.00 |
sec | 2002_08 | dssp | 1m4i:A | 59.7 | 78 | 54 | 39 | 64 | 65 | 63 | 54.0 | 73 | 43 | 48 | 13.8 | 0.16 | 0.17 | 0.17 | 0.47 | 0.31 | 0.43 | 0.0 | 12.0 | 13.0 |
sec | 2002_08 | dssp | 1mb6:A | 68.6 | 0 | 0 | 63 | 77 | 70 | 85 | 64.4 | 100 | 72 | 60 | 2.8 | 0.22 | 0.27 | 0.17 | 1.0 | 0.58 | 0.40 | 100.0 | 17.0 | 5.0 |
sec | 2002_08 | dssp | THIS_month:psum | 74.2 | 70 | 65 | 43 | 56 | 73 | 72 | 67.5 | 76.8 | 57.7 | 65.9 | 3.9 | 0.31 | 0.31 | 0.31 | 0.66 | 0.59 | 0.51 | 81.2 | 9 | 6.4 |
sec | 2002_08 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_08 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |