METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 672 |
NWEEKS : | 29 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2002_08 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_08 | dssp | ALL_proteins:psum | 82.9 | 86 | 87 | 77 | 85 | 85 | 80 | 78.7 | 80.5 | 77.7 | 77.7 | 1.5 | 0.53 | 0.53 | 0.53 | 0.79 | 0.76 | 0.70 | 8601.1 | 4.6 | 4.3 |
sec | 2002_08 | dssp | ALL_proteins:sig | 11.5 | 27 | 28 | 34 | 36 | 13 | 14 | 15.0 | 21.0 | 23.6 | 17.1 | 3.5 | 0.22 | 0.22 | 0.22 | 0.22 | 0.23 | 0.20 | 8521.5 | 6.2 | 6.4 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.44 | 1 | 1 | 1 | 1 | 0.51 | 0.54 | 0.58 | 0.81 | 0.91 | 0.66 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 328.7 | 0.24 | 0.24 |
sec | 2002_08 | dssp | THIS_month:psum | 74.5 | 67 | 69 | 40 | 53 | 79 | 71 | 70.1 | 76.7 | 56.3 | 71.8 | 4.2 | 0.32 | 0.33 | 0.32 | 0.67 | 0.64 | 0.54 | 93.7 | 9.8 | 6.6 |
sec | 2002_08 | dssp | 1h1j:S | 79.5 | 74 | 100 | 0 | 0 | 88 | 68 | 84.4 | 88 | 100 | 77 | 0.0 | 0.47 | 0.53 | 0.42 | 0.72 | 1.0 | 0.60 | 100.0 | 15.0 | 4.0 |
sec | 2002_08 | dssp | 1htw:A | 84.2 | 90 | 90 | 80 | 86 | 81 | 78 | 89.5 | 98 | 94 | 80 | 0.0 | 0.55 | 0.56 | 0.56 | 0.85 | 0.76 | 0.66 | 100.0 | 0.00 | 1.0 |
sec | 2002_08 | dssp | 1iw4:A | 47.3 | 71 | 17 | 0 | 0 | 55 | 80 | 41.8 | 57 | 0 | 50 | 12.7 | 0.03 | 0.04 | 0.04 | 0.14 | 1.0 | 0.23 | 100.0 | 40.0 | 18.0 |
sec | 2002_08 | dssp | 1jv1:A | 85.7 | 90 | 90 | 0 | 0 | 71 | 71 | 86.1 | 92 | 100 | 65 | 0.0 | 0.31 | 0.31 | 0.31 | 0.61 | 1.0 | 0.61 | 100.0 | 0.00 | 0.00 |
sec | 2002_08 | dssp | 1k4n:A | 69.7 | 88 | 67 | 46 | 88 | 74 | 63 | 64.9 | 73 | 51 | 69 | 9.2 | 0.30 | 0.30 | 0.31 | 0.62 | 0.53 | 0.53 | 0.0 | 11.0 | 16.0 |
sec | 2002_08 | dssp | 1koz:A | 77.8 | 0 | 0 | 33 | 50 | 86 | 92 | 69.3 | 100 | 22 | 76 | 5.5 | 0.17 | 0.21 | 0.14 | 1.0 | 0.31 | 0.47 | 100.0 | 11.0 | 5.0 |
sec | 2002_08 | dssp | 1kr4:A | 77.3 | 91 | 80 | 65 | 93 | 75 | 59 | 71.2 | 78 | 59 | 82 | 2.7 | 0.44 | 0.45 | 0.45 | 0.78 | 0.68 | 0.53 | 100.0 | 4.0 | 11.0 |
sec | 2002_08 | dssp | 1ku0:A | 72.2 | 61 | 93 | 55 | 62 | 87 | 65 | 60.4 | 61 | 54 | 61 | 1.5 | 0.31 | 0.30 | 0.33 | 0.64 | 0.52 | 0.50 | 100.0 | 13.0 | 1.0 |
sec | 2002_08 | dssp | 1l5p:A | 75.3 | 63 | 75 | 64 | 75 | 86 | 75 | 68.2 | 68 | 71 | 67 | 4.3 | 0.31 | 0.31 | 0.33 | 0.61 | 0.57 | 0.59 | 100.0 | 3.0 | 4.0 |
sec | 2002_08 | dssp | 1l7y:A | 80.9 | 63 | 100 | 67 | 79 | 95 | 77 | 80.7 | 63 | 82 | 86 | 3.1 | 0.46 | 0.44 | 0.49 | 0.76 | 0.63 | 0.70 | 100.0 | 7.0 | 4.0 |
sec | 2002_08 | dssp | 1l8d:A | 78.6 | 82 | 93 | 0 | 0 | 76 | 37 | 49.8 | 49 | 0 | 65 | 1.9 | 0.16 | 0.17 | 0.16 | 0.44 | 1.0 | 0.43 | 100.0 | 9.0 | 3.0 |
sec | 2002_08 | dssp | 1lmz:A | 82.9 | 88 | 86 | 0 | 0 | 80 | 83 | 65.9 | 66 | 0 | 68 | 1.6 | 0.37 | 0.38 | 0.37 | 0.71 | -0.02 | 0.68 | 100.0 | 1.0 | 0.00 |
sec | 2002_08 | dssp | 1luz:A | 83.5 | 64 | 90 | 78 | 93 | 96 | 74 | 88.9 | 89 | 85 | 93 | 2.3 | 0.53 | 0.52 | 0.55 | 0.72 | 0.76 | 0.73 | 100.0 | 4.0 | 7.0 |
sec | 2002_08 | dssp | 1lw7:A | 77.9 | 79 | 84 | 84 | 77 | 73 | 70 | 74.3 | 77 | 92 | 65 | 0.0 | 0.42 | 0.43 | 0.42 | 0.67 | 0.77 | 0.53 | 100.0 | 2.0 | 1.0 |
sec | 2002_08 | dssp | 1m4i:A | 63.0 | 72 | 50 | 40 | 72 | 77 | 70 | 63.6 | 69 | 47 | 74 | 17.1 | 0.20 | 0.20 | 0.21 | 0.41 | 0.38 | 0.58 | 100.0 | 12.0 | 15.0 |
sec | 2002_08 | dssp | 1mb6:A | 57.1 | 0 | 0 | 36 | 80 | 66 | 76 | 63.9 | 100 | 45 | 72 | 5.7 | 0.11 | 0.14 | 0.09 | 1.0 | 0.42 | 0.20 | 100.0 | 25.0 | 17.0 |
sec | 2002_08 | dssp | THIS_month:psum | 74.5 | 67 | 69 | 40 | 53 | 79 | 71 | 70.1 | 76.7 | 56.3 | 71.8 | 4.2 | 0.32 | 0.33 | 0.32 | 0.67 | 0.64 | 0.54 | 93.7 | 9.8 | 6.6 |
sec | 2002_08 | dssp | ALL_proteins:psum | 82.9 | 86 | 87 | 77 | 85 | 85 | 80 | 78.7 | 80.5 | 77.7 | 77.7 | 1.5 | 0.53 | 0.53 | 0.53 | 0.79 | 0.76 | 0.70 | 8601.1 | 4.6 | 4.3 |
sec | 2002_08 | dssp | ALL_proteins:sig | 11.5 | 27 | 28 | 34 | 36 | 13 | 14 | 15.0 | 21.0 | 23.6 | 17.1 | 3.5 | 0.22 | 0.22 | 0.22 | 0.22 | 0.23 | 0.20 | 8521.5 | 6.2 | 6.4 |
sec | 2002_08 | dssp | ALL_proteins:errsig | 0.44 | 1 | 1 | 1 | 1 | 0.51 | 0.54 | 0.58 | 0.81 | 0.91 | 0.66 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 328.7 | 0.24 | 0.24 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |