METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_07 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_07 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_07 | dssp | THIS_month:psum | 78.3 | 69 | 71 | 53 | 66 | 79 | 72 | 74.6 | 76.6 | 78.2 | 71.3 | 1.9 | 0.41 | 0.41 | 0.40 | 0.69 | 0.70 | 0.58 | 78.1 | 5.3 | 5.8 |
sec | 2002_07 | dssp | 1ifr:A | 88.5 | 0 | 0 | 83 | 91 | 93 | 85 | 85.2 | 100 | 87 | 83 | 0.0 | 0.49 | 0.49 | 0.50 | 1.0 | 0.77 | 0.77 | 0.0 | 0.00 | 4.0 |
sec | 2002_07 | dssp | 1ify:A | 89.8 | 96 | 87 | 0 | 0 | 78 | 93 | 93.9 | 100 | 100 | 84 | 0.0 | 0.52 | 0.51 | 0.54 | 0.78 | 1.0 | 0.78 | 100.0 | 6.0 | 0.00 |
sec | 2002_07 | dssp | 1ipa:A | 83.8 | 79 | 96 | 78 | 100 | 95 | 65 | 81.9 | 79 | 85 | 83 | 0.0 | 0.58 | 0.58 | 0.59 | 0.77 | 0.86 | 0.68 | 100.0 | 8.0 | 4.0 |
sec | 2002_07 | dssp | 1iqo:A | 67.0 | 77 | 54 | 85 | 54 | 57 | 85 | 61.7 | 90 | 50 | 56 | 2.2 | 0.30 | 0.32 | 0.28 | 0.50 | 0.60 | 0.44 | 0.0 | 10.0 | 9.0 |
sec | 2002_07 | dssp | 1iu1:B | 82.1 | 0 | 0 | 82 | 91 | 90 | 77 | 78.5 | 0 | 83 | 81 | 2.4 | 0.44 | 0.43 | 0.46 | -0.03 | 0.74 | 0.69 | 100.0 | 2.0 | 4.0 |
sec | 2002_07 | dssp | 1j58:A | 68.5 | 62 | 55 | 54 | 86 | 82 | 64 | 64.4 | 61 | 67 | 63 | 3.4 | 0.24 | 0.24 | 0.25 | 0.50 | 0.55 | 0.46 | 100.0 | 1.0 | 14.0 |
sec | 2002_07 | dssp | 1j5p:A | 80.6 | 77 | 90 | 86 | 81 | 78 | 73 | 81.9 | 76 | 98 | 76 | 0.4 | 0.48 | 0.48 | 0.49 | 0.76 | 0.77 | 0.60 | 0.0 | 4.0 | 1.0 |
sec | 2002_07 | dssp | 1j5s:A | 79.8 | 84 | 86 | 54 | 55 | 79 | 75 | 76.4 | 82 | 56 | 71 | 2.4 | 0.35 | 0.35 | 0.35 | 0.69 | 0.50 | 0.62 | 100.0 | 1.0 | 0.00 |
sec | 2002_07 | dssp | 1j5u:A | 59.1 | 87 | 58 | 37 | 95 | 64 | 46 | 52.7 | 53 | 48 | 56 | 4.7 | 0.27 | 0.26 | 0.28 | 0.59 | 0.48 | 0.26 | 100.0 | 12.0 | 25.0 |
sec | 2002_07 | dssp | 1j5w:B | 77.2 | 84 | 78 | 68 | 88 | 75 | 72 | 79.3 | 77 | 84 | 78 | 0.9 | 0.40 | 0.40 | 0.41 | 0.68 | 0.72 | 0.55 | 0.0 | 2.0 | 4.0 |
sec | 2002_07 | dssp | 1j5y:A | 80.2 | 87 | 90 | 61 | 86 | 83 | 64 | 75.6 | 71 | 76 | 84 | 2.3 | 0.46 | 0.45 | 0.47 | 0.79 | 0.66 | 0.61 | 0.0 | 1.0 | 6.0 |
sec | 2002_07 | dssp | 1jmm:A | 72.7 | 51 | 77 | 67 | 74 | 83 | 70 | 63.0 | 46 | 75 | 62 | 2.3 | 0.27 | 0.26 | 0.29 | 0.57 | 0.57 | 0.51 | 100.0 | 5.0 | 3.0 |
sec | 2002_07 | dssp | 1k0h:A | 70.1 | 0 | 0 | 84 | 70 | 65 | 93 | 46.4 | 100 | 96 | 39 | 0.0 | 0.35 | 0.46 | 0.24 | 1.0 | 0.70 | 0.42 | 100.0 | 18.0 | 4.0 |
sec | 2002_07 | dssp | 1kam:C | 92.9 | 100 | 100 | 76 | 100 | 100 | 84 | 100.0 | 100 | 100 | 100 | 0.0 | 0.83 | 0.82 | 0.84 | 1.0 | 0.83 | 0.86 | 100.0 | 0.00 | 7.0 |
sec | 2002_07 | dssp | 1kc0:A | 80.9 | 85 | 89 | 62 | 82 | 83 | 72 | 74.9 | 90 | 70 | 62 | 0.3 | 0.46 | 0.46 | 0.47 | 0.78 | 0.67 | 0.62 | 100.0 | 1.0 | 4.0 |
sec | 2002_07 | dssp | 1key:B | 86.0 | 88 | 96 | 0 | 0 | 79 | 79 | 83.1 | 91 | 100 | 64 | 4.0 | 0.42 | 0.49 | 0.35 | 0.71 | 1.0 | 0.72 | 0.0 | 6.0 | 6.0 |
sec | 2002_07 | dssp | 1kkx:A | 83.3 | 98 | 76 | 0 | 0 | 67 | 97 | 78.6 | 97 | 100 | 62 | 0.0 | 0.42 | 0.41 | 0.45 | 0.69 | 1.0 | 0.69 | 100.0 | 14.0 | 0.00 |
sec | 2002_07 | dssp | 1kll:A | 64.1 | 55 | 74 | 50 | 81 | 83 | 54 | 62.6 | 63 | 61 | 62 | 3.1 | 0.24 | 0.23 | 0.26 | 0.52 | 0.51 | 0.40 | 100.0 | 7.0 | 13.0 |
sec | 2002_07 | dssp | 1kmi:Z | 76.8 | 88 | 82 | 0 | 0 | 36 | 48 | 60.8 | 65 | 100 | 40 | 0.0 | 0.06 | 0.06 | 0.07 | 0.28 | 1.0 | 0.28 | 100.0 | 5.0 | 0.00 |
sec | 2002_07 | dssp | 1kn6:A | 76.7 | 70 | 60 | 64 | 81 | 83 | 83 | 81.9 | 82 | 64 | 87 | 4.1 | 0.34 | 0.34 | 0.34 | 0.53 | 0.67 | 0.60 | 100.0 | 4.0 | 4.0 |
sec | 2002_07 | dssp | 1kq1:H | 78.8 | 78 | 78 | 84 | 82 | 68 | 72 | 75.2 | 78 | 68 | 86 | 4.5 | 0.44 | 0.44 | 0.45 | 0.72 | 0.66 | 0.58 | 100.0 | 0.00 | 1.0 |
sec | 2002_07 | dssp | 1l3l:A | 83.7 | 89 | 88 | 69 | 100 | 81 | 72 | 83.0 | 92 | 94 | 66 | 0.0 | 0.53 | 0.52 | 0.55 | 0.76 | 0.81 | 0.64 | 100.0 | 0.00 | 4.0 |
sec | 2002_07 | dssp | 1lj2:B | 94.5 | 98 | 97 | 50 | 100 | 88 | 78 | 87.1 | 100 | 66 | 52 | 0.0 | 0.72 | 0.69 | 0.75 | 0.91 | 0.69 | 0.80 | 0.0 | 0.00 | 2.0 |
sec | 2002_07 | dssp | 1ljo:A | 53.3 | 40 | 28 | 47 | 83 | 69 | 43 | 48.4 | 29 | 48 | 60 | 9.3 | 0.11 | 0.12 | 0.11 | 0.21 | 0.37 | 0.26 | 100.0 | 5.0 | 24.0 |
sec | 2002_07 | dssp | 1lm5:B | 85.5 | 93 | 89 | 46 | 87 | 91 | 81 | 83.7 | 97 | 49 | 82 | 2.0 | 0.54 | 0.52 | 0.57 | 0.85 | 0.59 | 0.75 | 100.0 | 2.0 | 7.0 |
sec | 2002_07 | dssp | 1lqr:A | 65.7 | 0 | 0 | 40 | 25 | 70 | 95 | 68.6 | 100 | 40 | 73 | 5.7 | 0.12 | 0.17 | 0.08 | 1.0 | 0.16 | 0.36 | 100.0 | 14.0 | 8.0 |
sec | 2002_07 | dssp | 1lsh:A | 78.9 | 88 | 85 | 65 | 89 | 79 | 66 | 78.7 | 90 | 76 | 68 | 1.5 | 0.45 | 0.45 | 0.46 | 0.78 | 0.69 | 0.57 | 100.0 | 1.0 | 7.0 |
sec | 2002_07 | dssp | 1lsh:B | 82.2 | 73 | 89 | 81 | 91 | 85 | 71 | 83.2 | 82 | 85 | 80 | 0.0 | 0.48 | 0.48 | 0.49 | 0.78 | 0.73 | 0.64 | 100.0 | 2.0 | 5.0 |
sec | 2002_07 | dssp | 1lvf:A | 80.2 | 77 | 98 | 0 | 0 | 93 | 48 | 59.7 | 58 | 100 | 76 | 3.7 | 0.31 | 0.41 | 0.23 | 0.54 | 1.0 | 0.59 | 100.0 | 17.0 | 3.0 |
sec | 2002_07 | dssp | 1ly1:A | 78.9 | 69 | 98 | 90 | 69 | 90 | 66 | 70.7 | 60 | 100 | 79 | 2.6 | 0.46 | 0.47 | 0.45 | 0.69 | 0.75 | 0.63 | 100.0 | 15.0 | 3.0 |
sec | 2002_07 | dssp | 1m4v:A | 69.5 | 64 | 100 | 63 | 81 | 81 | 53 | 67.7 | 45 | 78 | 70 | 1.2 | 0.33 | 0.32 | 0.34 | 0.77 | 0.50 | 0.44 | 100.0 | 6.0 | 10.0 |
sec | 2002_07 | dssp | 1m62:A | 94.3 | 95 | 96 | 0 | 0 | 92 | 88 | 99.2 | 100 | 100 | 97 | 0.0 | 0.64 | 0.65 | 0.64 | 0.86 | 1.0 | 0.86 | 100.0 | 1.0 | 0.00 |
sec | 2002_07 | dssp | THIS_month:psum | 78.3 | 69 | 71 | 53 | 66 | 79 | 72 | 74.6 | 76.6 | 78.2 | 71.3 | 1.9 | 0.41 | 0.41 | 0.40 | 0.69 | 0.70 | 0.58 | 78.1 | 5.3 | 5.8 |
sec | 2002_07 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_07 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |