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EVA sec results for: PSIpred month: 2002_07

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_07 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_07 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_07	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_07	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_07	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_07	dssp	THIS_month:psum	80.1	71	73	55	62	77	77	79.2	83.5	81.8	74.4	1.6	0.44	0.45	0.43	0.72	0.74	0.62	85.1	5.9	3.8

sec	2002_07	dssp	1ifr:A	92.0	0	0	85	97	98	87	85.7	100	87	84	0.0	0.63	0.63	0.64	1.0	0.84	0.84	0.0	0.00	6.0
sec	2002_07	dssp	1ify:A	89.8	93	90	0	0	84	88	95.9	100	100	89	0.0	0.51	0.51	0.51	0.78	1.0	0.78	100.0	2.0	0.00
sec	2002_07	dssp	1ipa:A	86.8	79	100	85	100	100	68	81.9	79	85	83	0.0	0.67	0.68	0.67	0.81	0.90	0.74	100.0	10.0	2.0
sec	2002_07	dssp	1iqo:A	58.0	86	42	64	52	44	88	68.8	86	57	64	5.6	0.22	0.23	0.21	0.40	0.49	0.38	100.0	26.0	3.0
sec	2002_07	dssp	1iu1:B	81.3	0	0	82	89	88	80	83.1	0	90	83	4.0	0.45	0.45	0.46	-0.04	0.72	0.70	100.0	0.00	4.0
sec	2002_07	dssp	1j58:A	70.4	55	59	62	88	82	64	59.1	55	62	57	1.3	0.28	0.28	0.29	0.49	0.62	0.45	100.0	1.0	11.0
sec	2002_07	dssp	1j5p:A	82.0	84	78	81	90	80	79	89.9	90	91	88	2.3	0.48	0.49	0.49	0.71	0.81	0.66	100.0	2.0	2.0
sec	2002_07	dssp	1j5s:A	85.6	91	90	54	83	84	79	83.4	94	65	73	0.0	0.51	0.49	0.53	0.80	0.64	0.69	100.0	0.00	2.0
sec	2002_07	dssp	1j5w:B	70.3	76	72	54	85	73	63	75.0	78	70	74	1.9	0.29	0.28	0.30	0.58	0.62	0.44	0.0	1.0	7.0
sec	2002_07	dssp	1jmm:A	75.6	57	88	73	74	83	73	66.7	62	77	62	1.3	0.33	0.32	0.35	0.66	0.61	0.54	100.0	6.0	0.00
sec	2002_07	dssp	1k0h:A	62.4	0	0	88	60	54	94	51.9	100	91	44	0.0	0.30	0.40	0.20	1.0	0.63	0.36	100.0	22.0	10.0
sec	2002_07	dssp	1kam:C	88.1	100	92	76	90	87	82	95.2	100	92	93	0.0	0.67	0.68	0.68	0.94	0.77	0.75	100.0	2.0	4.0
sec	2002_07	dssp	1kc0:A	83.6	88	91	57	91	90	74	76.7	87	66	69	0.6	0.52	0.50	0.54	0.82	0.68	0.69	100.0	1.0	6.0
sec	2002_07	dssp	1key:B	81.0	81	93	0	0	79	67	87.6	88	100	85	4.9	0.29	0.35	0.25	0.56	1.0	0.63	0.0	9.0	5.0
sec	2002_07	dssp	1kkx:A	86.3	100	79	0	0	71	100	78.3	91	100	67	0.0	0.53	0.51	0.55	0.75	1.0	0.75	100.0	13.0	0.00
sec	2002_07	dssp	1kll:A	75.8	75	87	63	82	87	66	74.3	76	72	75	3.1	0.42	0.41	0.43	0.74	0.60	0.59	100.0	3.0	7.0
sec	2002_07	dssp	1kmi:Z	78.6	88	84	0	0	44	53	59.6	61	100	47	0.0	0.10	0.10	0.11	0.35	1.0	0.35	100.0	3.0	0.00
sec	2002_07	dssp	1kn6:A	75.3	82	77	78	57	71	83	67.0	85	81	58	0.0	0.38	0.40	0.37	0.73	0.58	0.51	100.0	1.0	6.0
sec	2002_07	dssp	1kq1:H	86.4	78	100	96	80	73	93	73.1	78	67	78	4.5	0.60	0.57	0.63	0.86	0.74	0.77	100.0	4.0	10.0
sec	2002_07	dssp	1l3l:A	82.8	90	86	69	100	77	72	84.1	90	91	70	0.0	0.52	0.51	0.54	0.75	0.81	0.62	100.0	2.0	4.0
sec	2002_07	dssp	1lj2:B	92.7	95	97	66	100	88	71	99.4	100	100	96	0.0	0.62	0.63	0.62	0.84	0.80	0.75	0.0	1.0	1.0
sec	2002_07	dssp	1ljo:A	81.3	70	87	88	86	73	70	77.9	70	76	84	1.3	0.42	0.42	0.43	0.75	0.70	0.59	100.0	2.0	1.0
sec	2002_07	dssp	1lqr:A	54.3	0	0	20	16	60	100	63.3	100	3	73	11.4	0.21	0.31	0.12	1.0	0.03	0.42	100.0	31.0	2.0
sec	2002_07	dssp	1lvf:A	86.8	86	97	0	0	87	60	92.2	95	100	73	2.8	0.37	0.45	0.30	0.61	1.0	0.67	100.0	9.0	2.0
sec	2002_07	dssp	1ly1:A	88.8	90	94	95	82	84	82	89.5	92	100	80	0.0	0.62	0.64	0.62	0.84	0.86	0.75	100.0	2.0	1.0
sec	2002_07	dssp	1m4v:A	76.8	78	100	70	87	85	60	85.5	100	87	75	0.0	0.46	0.46	0.47	0.86	0.62	0.54	100.0	3.0	9.0
sec	2002_07	dssp	1m62:A	90.8	96	90	0	0	76	90	95.8	100	100	85	0.0	0.50	0.49	0.53	0.76	1.0	0.76	100.0	4.0	0.00

sec	2002_07	dssp	THIS_month:psum	80.1	71	73	55	62	77	77	79.2	83.5	81.8	74.4	1.6	0.44	0.45	0.43	0.72	0.74	0.62	85.1	5.9	3.8

sec	2002_07	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_07	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_07	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_07
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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