METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 103 |
NWEEKS : | 20 |
NOTE 1 : | here ALL results obtained for Prospect in month 2002_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_07 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_07 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
sec | 2002_07 | dssp | THIS_month:psum | 76.9 | 67 | 69 | 50 | 63 | 80 | 72 | 76.5 | 80.5 | 77.8 | 72.6 | 2.6 | 0.39 | 0.40 | 0.38 | 0.66 | 0.73 | 0.58 | 75.8 | 6.3 | 6.7 |
sec | 2002_07 | dssp | 1ifr:A | 82.3 | 0 | 0 | 74 | 90 | 89 | 81 | 83.8 | 100 | 82 | 84 | 1.7 | 0.36 | 0.40 | 0.34 | 1.0 | 0.68 | 0.68 | 0.0 | 3.0 | 8.0 |
sec | 2002_07 | dssp | 1ify:A | 87.8 | 90 | 90 | 0 | 0 | 84 | 84 | 94.6 | 100 | 100 | 86 | 0.0 | 0.44 | 0.45 | 0.45 | 0.74 | 1.0 | 0.74 | 100.0 | 0.00 | 0.00 |
sec | 2002_07 | dssp | 1ipa:A | 95.6 | 97 | 97 | 100 | 93 | 90 | 94 | 89.4 | 86 | 100 | 87 | 0.0 | 0.82 | 0.83 | 0.82 | 0.94 | 0.95 | 0.89 | 0.0 | 0.00 | 1.0 |
sec | 2002_07 | dssp | 1iqo:A | 60.2 | 77 | 43 | 78 | 61 | 48 | 80 | 70.8 | 77 | 78 | 65 | 2.2 | 0.22 | 0.24 | 0.22 | 0.38 | 0.62 | 0.32 | 100.0 | 19.0 | 4.0 |
sec | 2002_07 | dssp | 1iu1:B | 69.1 | 0 | 0 | 61 | 90 | 85 | 73 | 70.2 | 0 | 74 | 72 | 10.5 | 0.30 | 0.33 | 0.28 | -0.09 | 0.57 | 0.60 | 0.0 | 8.0 | 16.0 |
sec | 2002_07 | dssp | 1j58:A | 64.8 | 46 | 45 | 50 | 91 | 83 | 60 | 56.7 | 44 | 60 | 57 | 2.9 | 0.21 | 0.20 | 0.22 | 0.36 | 0.56 | 0.39 | 100.0 | 0.00 | 17.0 |
sec | 2002_07 | dssp | 1j5p:A | 78.2 | 80 | 80 | 81 | 84 | 73 | 71 | 79.7 | 82 | 86 | 72 | 0.9 | 0.43 | 0.43 | 0.44 | 0.70 | 0.76 | 0.55 | 100.0 | 0.00 | 0.00 |
sec | 2002_07 | dssp | 1j5s:A | 79.8 | 82 | 87 | 51 | 63 | 81 | 73 | 83.1 | 92 | 59 | 75 | 1.7 | 0.35 | 0.35 | 0.36 | 0.69 | 0.53 | 0.62 | 100.0 | 3.0 | 1.0 |
sec | 2002_07 | dssp | 1j5w:B | 72.3 | 76 | 76 | 50 | 100 | 80 | 63 | 74.8 | 76 | 68 | 76 | 0.9 | 0.35 | 0.34 | 0.38 | 0.62 | 0.66 | 0.47 | 0.0 | 0.00 | 10.0 |
sec | 2002_07 | dssp | 1jmm:A | 71.1 | 53 | 66 | 57 | 75 | 86 | 70 | 64.2 | 57 | 62 | 67 | 4.5 | 0.23 | 0.23 | 0.25 | 0.51 | 0.51 | 0.52 | 100.0 | 3.0 | 7.0 |
sec | 2002_07 | dssp | 1k0h:A | 65.0 | 0 | 0 | 69 | 51 | 63 | 87 | 48.0 | 100 | 78 | 43 | 0.0 | 0.16 | 0.21 | 0.12 | 1.0 | 0.45 | 0.27 | 100.0 | 13.0 | 7.0 |
sec | 2002_07 | dssp | 1kam:C | 85.7 | 84 | 91 | 76 | 100 | 93 | 75 | 98.6 | 100 | 100 | 96 | 0.0 | 0.61 | 0.61 | 0.63 | 0.83 | 0.83 | 0.72 | 100.0 | 2.0 | 7.0 |
sec | 2002_07 | dssp | 1kc0:A | 79.5 | 80 | 88 | 64 | 70 | 85 | 75 | 79.9 | 90 | 65 | 74 | 4.0 | 0.39 | 0.39 | 0.40 | 0.73 | 0.60 | 0.66 | 100.0 | 3.0 | 1.0 |
sec | 2002_07 | dssp | 1key:B | 81.4 | 85 | 93 | 0 | 0 | 69 | 68 | 83.4 | 93 | 100 | 60 | 3.6 | 0.29 | 0.34 | 0.24 | 0.61 | 1.0 | 0.59 | 0.0 | 6.0 | 6.0 |
sec | 2002_07 | dssp | 1kkx:A | 76.5 | 90 | 72 | 0 | 0 | 61 | 96 | 71.3 | 91 | 100 | 54 | 3.9 | 0.33 | 0.35 | 0.31 | 0.56 | 1.0 | 0.64 | 100.0 | 12.0 | 4.0 |
sec | 2002_07 | dssp | 1kll:A | 75.8 | 63 | 100 | 63 | 93 | 95 | 61 | 75.7 | 83 | 72 | 72 | 0.0 | 0.47 | 0.45 | 0.51 | 0.74 | 0.68 | 0.58 | 100.0 | 10.0 | 10.0 |
sec | 2002_07 | dssp | 1kmi:Z | 78.0 | 87 | 84 | 0 | 0 | 44 | 51 | 68.7 | 72 | 100 | 50 | 0.0 | 0.09 | 0.10 | 0.10 | 0.34 | 1.0 | 0.34 | 100.0 | 2.0 | 0.00 |
sec | 2002_07 | dssp | 1kn6:A | 71.2 | 64 | 55 | 85 | 75 | 69 | 78 | 51.3 | 64 | 81 | 42 | 0.0 | 0.33 | 0.34 | 0.33 | 0.46 | 0.75 | 0.42 | 100.0 | 4.0 | 2.0 |
sec | 2002_07 | dssp | 1kq1:H | 74.2 | 92 | 81 | 60 | 86 | 84 | 59 | 73.8 | 92 | 63 | 82 | 4.5 | 0.43 | 0.44 | 0.42 | 0.83 | 0.54 | 0.55 | 100.0 | 3.0 | 15.0 |
sec | 2002_07 | dssp | 1l3l:A | 80.7 | 89 | 87 | 52 | 100 | 80 | 67 | 83.4 | 94 | 69 | 73 | 0.0 | 0.48 | 0.47 | 0.51 | 0.75 | 0.69 | 0.58 | 100.0 | 0.00 | 7.0 |
sec | 2002_07 | dssp | 1lj2:B | 89.1 | 89 | 100 | 66 | 80 | 94 | 59 | 71.2 | 69 | 85 | 85 | 0.0 | 0.58 | 0.63 | 0.54 | 0.80 | 0.71 | 0.69 | 0.0 | 8.0 | 0.00 |
sec | 2002_07 | dssp | 1ljo:A | 72.0 | 60 | 50 | 69 | 90 | 82 | 61 | 82.1 | 70 | 83 | 84 | 6.6 | 0.30 | 0.31 | 0.29 | 0.47 | 0.60 | 0.55 | 100.0 | 2.0 | 13.0 |
sec | 2002_07 | dssp | 1lm5:B | 82.4 | 89 | 94 | 33 | 90 | 93 | 72 | 72.3 | 88 | 36 | 66 | 0.0 | 0.54 | 0.50 | 0.59 | 0.86 | 0.51 | 0.67 | 100.0 | 2.0 | 9.0 |
sec | 2002_07 | dssp | 1lqr:A | 54.3 | 0 | 0 | 0 | 0 | 63 | 95 | 71.4 | 100 | 0 | 83 | 11.4 | 0.09 | 0.12 | 0.07 | 1.0 | 1.0 | 0.30 | 100.0 | 42.0 | 14.0 |
sec | 2002_07 | dssp | 1lsh:B | 66.7 | 69 | 36 | 55 | 94 | 81 | 65 | 74.4 | 75 | 67 | 83 | 10.9 | 0.26 | 0.27 | 0.25 | 0.39 | 0.56 | 0.54 | 100.0 | 12.0 | 20.0 |
sec | 2002_07 | dssp | 1lvf:A | 82.1 | 78 | 100 | 0 | 0 | 100 | 57 | 79.0 | 79 | 100 | 75 | 6.6 | 0.44 | 0.57 | 0.30 | 0.60 | 1.0 | 0.70 | 0.0 | 17.0 | 6.0 |
sec | 2002_07 | dssp | 1ly1:A | 84.9 | 86 | 89 | 95 | 86 | 78 | 76 | 89.6 | 92 | 100 | 80 | 0.0 | 0.54 | 0.55 | 0.54 | 0.75 | 0.89 | 0.66 | 100.0 | 1.0 | 1.0 |
sec | 2002_07 | dssp | 1m4v:A | 75.6 | 57 | 100 | 73 | 90 | 88 | 58 | 79.4 | 71 | 89 | 68 | 0.0 | 0.42 | 0.41 | 0.44 | 0.72 | 0.67 | 0.54 | 100.0 | 7.0 | 9.0 |
sec | 2002_07 | dssp | 1m62:A | 96.6 | 95 | 100 | 0 | 0 | 100 | 89 | 99.1 | 100 | 100 | 97 | 0.0 | 0.79 | 0.82 | 0.78 | 0.92 | 1.0 | 0.92 | 100.0 | 3.0 | 0.00 |
sec | 2002_07 | dssp | THIS_month:psum | 76.9 | 67 | 69 | 50 | 63 | 80 | 72 | 76.5 | 80.5 | 77.8 | 72.6 | 2.6 | 0.39 | 0.40 | 0.38 | 0.66 | 0.73 | 0.58 | 75.8 | 6.3 | 6.7 |
sec | 2002_07 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_07 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |