METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2002_07 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_07 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_07 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2002_07 | dssp | THIS_month:psum | 76.4 | 66 | 71 | 49 | 65 | 82 | 68 | 77.5 | 78.0 | 79.1 | 74.5 | 2.3 | 0.37 | 0.37 | 0.37 | 0.63 | 0.69 | 0.57 | 86.2 | 6 | 7.1 |
sec | 2002_07 | dssp | 1ifr:A | 85.8 | 0 | 0 | 75 | 93 | 94 | 81 | 83.8 | 100 | 85 | 82 | 0.0 | 0.44 | 0.43 | 0.45 | 1.0 | 0.72 | 0.72 | 0.0 | 0.00 | 8.0 |
sec | 2002_07 | dssp | 1ify:A | 89.8 | 90 | 93 | 0 | 0 | 89 | 85 | 100.0 | 100 | 100 | 100 | 0.0 | 0.51 | 0.52 | 0.51 | 0.78 | 1.0 | 0.78 | 100.0 | 2.0 | 0.00 |
sec | 2002_07 | dssp | 1ipa:A | 83.8 | 76 | 100 | 78 | 100 | 100 | 64 | 81.2 | 79 | 85 | 81 | 0.0 | 0.62 | 0.62 | 0.63 | 0.78 | 0.86 | 0.70 | 100.0 | 11.0 | 4.0 |
sec | 2002_07 | dssp | 1iqo:A | 65.9 | 81 | 50 | 64 | 52 | 59 | 88 | 75.5 | 88 | 60 | 74 | 5.6 | 0.27 | 0.28 | 0.26 | 0.48 | 0.49 | 0.48 | 100.0 | 15.0 | 3.0 |
sec | 2002_07 | dssp | 1iu1:B | 80.5 | 0 | 0 | 77 | 92 | 92 | 74 | 84.1 | 0 | 95 | 80 | 2.4 | 0.41 | 0.40 | 0.43 | -0.03 | 0.71 | 0.67 | 0.0 | 2.0 | 8.0 |
sec | 2002_07 | dssp | 1j58:A | 70.2 | 46 | 69 | 54 | 93 | 91 | 62 | 60.5 | 54 | 58 | 64 | 1.0 | 0.29 | 0.27 | 0.32 | 0.50 | 0.60 | 0.48 | 100.0 | 5.0 | 16.0 |
sec | 2002_07 | dssp | 1j5p:A | 78.2 | 76 | 80 | 78 | 85 | 80 | 71 | 85.5 | 83 | 88 | 85 | 2.3 | 0.42 | 0.42 | 0.43 | 0.67 | 0.75 | 0.59 | 100.0 | 1.0 | 2.0 |
sec | 2002_07 | dssp | 1j5s:A | 73.2 | 76 | 84 | 40 | 34 | 75 | 68 | 75.0 | 87 | 43 | 65 | 4.2 | 0.23 | 0.24 | 0.23 | 0.60 | 0.31 | 0.53 | 100.0 | 4.0 | 1.0 |
sec | 2002_07 | dssp | 1j5u:A | 57.5 | 62 | 50 | 41 | 95 | 73 | 48 | 64.9 | 78 | 59 | 61 | 7.8 | 0.19 | 0.18 | 0.20 | 0.38 | 0.51 | 0.32 | 100.0 | 6.0 | 23.0 |
sec | 2002_07 | dssp | 1j5w:B | 72.3 | 65 | 92 | 50 | 64 | 90 | 64 | 71.4 | 65 | 68 | 78 | 3.9 | 0.33 | 0.32 | 0.35 | 0.68 | 0.46 | 0.56 | 0.0 | 10.0 | 4.0 |
sec | 2002_07 | dssp | 1j5y:A | 76.2 | 73 | 100 | 71 | 73 | 85 | 57 | 87.4 | 93 | 87 | 76 | 2.3 | 0.44 | 0.45 | 0.44 | 0.76 | 0.63 | 0.55 | 100.0 | 12.0 | 0.00 |
sec | 2002_07 | dssp | 1jmm:A | 71.9 | 45 | 68 | 62 | 78 | 87 | 69 | 61.8 | 47 | 67 | 62 | 3.4 | 0.26 | 0.24 | 0.28 | 0.48 | 0.57 | 0.52 | 100.0 | 5.0 | 6.0 |
sec | 2002_07 | dssp | 1k0h:A | 69.2 | 0 | 0 | 80 | 51 | 65 | 92 | 51.8 | 100 | 90 | 46 | 0.0 | 0.20 | 0.26 | 0.15 | 1.0 | 0.51 | 0.39 | 100.0 | 9.0 | 12.0 |
sec | 2002_07 | dssp | 1kam:C | 85.7 | 92 | 92 | 69 | 100 | 93 | 75 | 97.6 | 100 | 92 | 100 | 0.0 | 0.63 | 0.62 | 0.65 | 0.88 | 0.77 | 0.72 | 100.0 | 0.00 | 9.0 |
sec | 2002_07 | dssp | 1kc0:A | 81.5 | 83 | 94 | 51 | 82 | 93 | 71 | 76.1 | 88 | 63 | 68 | 1.3 | 0.48 | 0.46 | 0.50 | 0.81 | 0.59 | 0.67 | 100.0 | 5.0 | 6.0 |
sec | 2002_07 | dssp | 1key:B | 80.1 | 81 | 94 | 0 | 0 | 75 | 66 | 83.1 | 89 | 100 | 68 | 4.9 | 0.29 | 0.35 | 0.23 | 0.59 | 1.0 | 0.61 | 0.0 | 10.0 | 7.0 |
sec | 2002_07 | dssp | 1kkx:A | 88.2 | 94 | 84 | 0 | 0 | 81 | 93 | 97.2 | 96 | 100 | 98 | 0.0 | 0.49 | 0.49 | 0.50 | 0.76 | 1.0 | 0.76 | 100.0 | 5.0 | 0.00 |
sec | 2002_07 | dssp | 1kll:A | 65.6 | 55 | 90 | 40 | 90 | 95 | 53 | 58.7 | 63 | 50 | 62 | 1.5 | 0.33 | 0.29 | 0.37 | 0.63 | 0.50 | 0.47 | 100.0 | 10.0 | 18.0 |
sec | 2002_07 | dssp | 1kmi:Z | 73.2 | 84 | 81 | 0 | 0 | 34 | 41 | 50.1 | 52 | 100 | 36 | 1.1 | 0.04 | 0.04 | 0.04 | 0.19 | 1.0 | 0.21 | 100.0 | 2.0 | 1.0 |
sec | 2002_07 | dssp | 1kn6:A | 76.7 | 58 | 62 | 57 | 88 | 90 | 79 | 77.8 | 64 | 64 | 87 | 4.1 | 0.33 | 0.32 | 0.36 | 0.49 | 0.66 | 0.60 | 100.0 | 1.0 | 6.0 |
sec | 2002_07 | dssp | 1kq1:H | 80.3 | 71 | 100 | 81 | 84 | 84 | 66 | 81.7 | 78 | 81 | 85 | 3.0 | 0.46 | 0.46 | 0.47 | 0.81 | 0.66 | 0.63 | 100.0 | 6.0 | 1.0 |
sec | 2002_07 | dssp | 1l3l:A | 80.7 | 85 | 87 | 63 | 100 | 81 | 67 | 83.6 | 90 | 86 | 72 | 0.0 | 0.48 | 0.47 | 0.49 | 0.72 | 0.77 | 0.59 | 100.0 | 1.0 | 5.0 |
sec | 2002_07 | dssp | 1ljo:A | 65.3 | 60 | 42 | 64 | 93 | 69 | 50 | 76.2 | 70 | 79 | 72 | 4.0 | 0.24 | 0.26 | 0.23 | 0.41 | 0.59 | 0.36 | 100.0 | 5.0 | 17.0 |
sec | 2002_07 | dssp | 1lm5:B | 78.2 | 90 | 77 | 40 | 92 | 80 | 77 | 71.7 | 77 | 43 | 74 | 3.6 | 0.37 | 0.35 | 0.40 | 0.69 | 0.56 | 0.62 | 100.0 | 7.0 | 8.0 |
sec | 2002_07 | dssp | 1lsh:B | 63.8 | 60 | 33 | 50 | 97 | 82 | 60 | 69.4 | 63 | 69 | 72 | 10.3 | 0.24 | 0.25 | 0.24 | 0.33 | 0.56 | 0.50 | 100.0 | 10.0 | 24.0 |
sec | 2002_07 | dssp | 1lvf:A | 81.1 | 77 | 100 | 0 | 0 | 100 | 48 | 75.8 | 76 | 100 | 70 | 2.8 | 0.38 | 0.49 | 0.28 | 0.58 | 1.0 | 0.62 | 100.0 | 18.0 | 2.0 |
sec | 2002_07 | dssp | 1ly1:A | 78.9 | 74 | 92 | 80 | 88 | 86 | 63 | 86.2 | 88 | 100 | 77 | 0.0 | 0.45 | 0.46 | 0.45 | 0.67 | 0.82 | 0.58 | 100.0 | 10.0 | 1.0 |
sec | 2002_07 | dssp | 1m4v:A | 69.5 | 78 | 73 | 63 | 89 | 74 | 52 | 80.8 | 95 | 82 | 70 | 0.0 | 0.36 | 0.36 | 0.36 | 0.70 | 0.58 | 0.38 | 100.0 | 1.0 | 14.0 |
sec | 2002_07 | dssp | 1m62:A | 94.3 | 95 | 96 | 0 | 0 | 92 | 88 | 99.2 | 100 | 100 | 97 | 0.0 | 0.64 | 0.65 | 0.64 | 0.86 | 1.0 | 0.86 | 100.0 | 1.0 | 0.00 |
sec | 2002_07 | dssp | THIS_month:psum | 76.4 | 66 | 71 | 49 | 65 | 82 | 68 | 77.5 | 78.0 | 79.1 | 74.5 | 2.3 | 0.37 | 0.37 | 0.37 | 0.63 | 0.69 | 0.57 | 86.2 | 6 | 7.1 |
sec | 2002_07 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_07 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_07 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |