METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_06 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_06 | dssp | THIS_month:psum | 70.8 | 67 | 68 | 37 | 49 | 72 | 71 | 64.9 | 73.2 | 70.2 | 63.5 | 5.3 | 0.34 | 0.35 | 0.34 | 0.68 | 0.62 | 0.51 | 86.9 | 10.5 | 9.7 |
sec | 2002_06 | dssp | 1gr8:A | 83.7 | 82 | 92 | 66 | 84 | 91 | 76 | 78.4 | 87 | 77 | 70 | 1.2 | 0.49 | 0.49 | 0.51 | 0.79 | 0.70 | 0.70 | 100.0 | 4.0 | 3.0 |
sec | 2002_06 | dssp | 1gty:A | 63.8 | 0 | 0 | 41 | 100 | 87 | 68 | 64.3 | 100 | 51 | 78 | 10.0 | 0.24 | 0.28 | 0.21 | 1.0 | 0.50 | 0.49 | 0.0 | 16.0 | 29.0 |
sec | 2002_06 | dssp | 1gw5:B | 80.0 | 94 | 78 | 0 | 0 | 53 | 85 | 75.6 | 92 | 100 | 52 | 0.0 | 0.26 | 0.25 | 0.29 | 0.56 | 1.0 | 0.55 | 100.0 | 13.0 | 0.00 |
sec | 2002_06 | dssp | 1gw5:S | 87.3 | 100 | 90 | 81 | 83 | 72 | 85 | 84.9 | 89 | 77 | 83 | 1.4 | 0.62 | 0.62 | 0.64 | 0.90 | 0.76 | 0.71 | 100.0 | 4.0 | 0.00 |
sec | 2002_06 | dssp | 1jy4:A | 31.4 | 0 | 0 | 16 | 80 | 63 | 77 | 33.8 | 100 | 16 | 71 | 51.4 | 0.22 | 0.27 | 0.18 | 1.0 | 0.10 | 0.58 | 100.0 | 60.0 | 54.0 |
sec | 2002_06 | dssp | 1k8v:A | 82.1 | 94 | 88 | 0 | 0 | 72 | 94 | 52.0 | 100 | 100 | 37 | 0.0 | 0.53 | 0.62 | 0.45 | 0.84 | 1.0 | 0.66 | 100.0 | 2.0 | 10.0 |
sec | 2002_06 | dssp | 1kmd:A | 74.4 | 90 | 69 | 56 | 64 | 67 | 83 | 65.5 | 74 | 50 | 65 | 2.5 | 0.32 | 0.32 | 0.32 | 0.65 | 0.54 | 0.54 | 100.0 | 11.0 | 1.0 |
sec | 2002_06 | dssp | 1kw4:A | 78.6 | 76 | 89 | 0 | 0 | 83 | 71 | 81.9 | 84 | 100 | 77 | 4.2 | 0.30 | 0.34 | 0.27 | 0.56 | 1.0 | 0.63 | 100.0 | 9.0 | 4.0 |
sec | 2002_06 | dssp | 1l1o:C | 82.7 | 97 | 87 | 74 | 87 | 78 | 75 | 79.5 | 100 | 74 | 69 | 0.5 | 0.55 | 0.55 | 0.55 | 0.89 | 0.70 | 0.63 | 0.0 | 3.0 | 5.0 |
sec | 2002_06 | dssp | 1l2p:A | 100.0 | 100 | 100 | 0 | 0 | 100 | 100 | 100.0 | 100 | 100 | 100 | 0.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 100.0 | 0.00 | 0.00 |
sec | 2002_06 | dssp | 1l2r:A | 67.6 | 73 | 79 | 32 | 44 | 74 | 62 | 62.9 | 68 | 32 | 67 | 4.1 | 0.20 | 0.20 | 0.21 | 0.57 | 0.29 | 0.43 | 100.0 | 3.0 | 3.0 |
sec | 2002_06 | dssp | 1l2w:I | 56.1 | 88 | 48 | 9 | 100 | 55 | 64 | 52.5 | 73 | 9 | 56 | 5.2 | 0.15 | 0.14 | 0.18 | 0.44 | 0.27 | 0.23 | 100.0 | 24.0 | 17.0 |
sec | 2002_06 | dssp | 1l3a:C | 68.1 | 65 | 92 | 58 | 74 | 80 | 57 | 61.1 | 56 | 72 | 53 | 1.6 | 0.30 | 0.29 | 0.32 | 0.73 | 0.46 | 0.42 | 100.0 | 6.0 | 8.0 |
sec | 2002_06 | dssp | 1l6p:A | 64.5 | 42 | 42 | 52 | 92 | 90 | 50 | 58.2 | 57 | 55 | 64 | 2.4 | 0.22 | 0.23 | 0.23 | 0.39 | 0.47 | 0.43 | 100.0 | 0.00 | 26.0 |
sec | 2002_06 | dssp | 1l8r:A | 65.3 | 51 | 81 | 87 | 65 | 67 | 54 | 67.3 | 62 | 96 | 54 | 4.9 | 0.27 | 0.28 | 0.27 | 0.47 | 0.66 | 0.37 | 0.0 | 15.0 | 7.0 |
sec | 2002_06 | dssp | 1l8y:A | 84.3 | 94 | 84 | 0 | 0 | 61 | 84 | 48.7 | 42 | 100 | 63 | 0.0 | 0.32 | 0.30 | 0.35 | 0.62 | 1.0 | 0.62 | 100.0 | 8.0 | 0.00 |
sec | 2002_06 | dssp | 1l9v:A | 74.4 | 77 | 84 | 68 | 62 | 73 | 70 | 63.9 | 73 | 70 | 53 | 1.2 | 0.34 | 0.34 | 0.34 | 0.67 | 0.58 | 0.50 | 100.0 | 3.0 | 1.0 |
sec | 2002_06 | dssp | 1lf7:A | 83.3 | 50 | 100 | 93 | 87 | 89 | 77 | 81.6 | 50 | 100 | 80 | 0.0 | 0.56 | 0.54 | 0.60 | 0.66 | 0.84 | 0.67 | 100.0 | 9.0 | 2.0 |
sec | 2002_06 | dssp | 1ln1:A | 82.3 | 95 | 81 | 73 | 92 | 82 | 74 | 82.3 | 92 | 87 | 70 | 1.9 | 0.51 | 0.52 | 0.52 | 0.84 | 0.72 | 0.66 | 100.0 | 4.0 | 8.0 |
sec | 2002_06 | dssp | 1lq7:A | 86.6 | 92 | 90 | 0 | 0 | 68 | 73 | 99.3 | 100 | 100 | 96 | 0.0 | 0.32 | 0.32 | 0.33 | 0.62 | 1.0 | 0.62 | 100.0 | 1.0 | 0.00 |
sec | 2002_06 | dssp | 1ls7:A | 68.8 | 71 | 76 | 0 | 0 | 64 | 58 | 53.7 | 56 | 100 | 49 | 0.0 | 0.09 | 0.10 | 0.09 | 0.35 | 1.0 | 0.35 | 100.0 | 4.0 | 0.00 |
sec | 2002_06 | dssp | 1lub:A | 28.0 | 0 | 0 | 33 | 7 | 46 | 54 | 17.8 | 0 | 30 | 23 | 24.0 | 0.02 | 0.02 | 0.03 | 1.0 | -0.16 | 0.04 | 100.0 | 36.0 | 44.0 |
sec | 2002_06 | dssp | 1luo:A | 36.4 | 29 | 18 | 21 | 23 | 45 | 50 | 28.7 | 30 | 20 | 32 | 6.6 | 0.02 | 0.03 | 0.02 | 0.06 | -0.06 | -0.14 | 100.0 | 7.0 | 3.0 |
sec | 2002_06 | dssp | THIS_month:psum | 70.8 | 67 | 68 | 37 | 49 | 72 | 71 | 64.9 | 73.2 | 70.2 | 63.5 | 5.3 | 0.34 | 0.35 | 0.34 | 0.68 | 0.62 | 0.51 | 86.9 | 10.5 | 9.7 |
sec | 2002_06 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |