METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2002_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_06 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_06 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2002_06 | dssp | THIS_month:psum | 78.3 | 74 | 69 | 38 | 51 | 69 | 68 | 70.9 | 80.1 | 77.9 | 61.8 | 2.1 | 0.33 | 0.34 | 0.33 | 0.66 | 0.73 | 0.60 | 92.8 | 5.7 | 5.9 |
sec | 2002_06 | dssp | 1gty:A | 83.8 | 0 | 0 | 73 | 93 | 94 | 77 | 82.4 | 100 | 77 | 87 | 0.0 | 0.40 | 0.40 | 0.41 | 1.0 | 0.69 | 0.69 | 0.0 | 0.00 | 11.0 |
sec | 2002_06 | dssp | 1gw5:S | 88.7 | 93 | 93 | 78 | 93 | 90 | 78 | 88.4 | 91 | 86 | 85 | 1.4 | 0.63 | 0.63 | 0.64 | 0.88 | 0.81 | 0.77 | 100.0 | 0.00 | 4.0 |
sec | 2002_06 | dssp | 1jy4:A | 65.7 | 0 | 0 | 58 | 100 | 81 | 64 | 72.9 | 100 | 70 | 77 | 14.2 | 0.30 | 0.39 | 0.23 | 1.0 | 0.55 | 0.57 | 100.0 | 20.0 | 28.0 |
sec | 2002_06 | dssp | 1k8v:A | 87.2 | 94 | 88 | 0 | 0 | 81 | 94 | 71.9 | 100 | 100 | 60 | 0.0 | 0.55 | 0.62 | 0.49 | 0.84 | 1.0 | 0.75 | 100.0 | 2.0 | 5.0 |
sec | 2002_06 | dssp | 1kmd:A | 67.5 | 95 | 60 | 37 | 66 | 55 | 78 | 55.3 | 68 | 36 | 53 | 2.5 | 0.26 | 0.25 | 0.28 | 0.58 | 0.44 | 0.42 | 100.0 | 20.0 | 5.0 |
sec | 2002_06 | dssp | 1kw4:A | 81.4 | 91 | 82 | 0 | 0 | 62 | 78 | 69.2 | 72 | 100 | 59 | 0.0 | 0.26 | 0.25 | 0.28 | 0.57 | 1.0 | 0.57 | 100.0 | 7.0 | 0.00 |
sec | 2002_06 | dssp | 1l1o:C | 85.3 | 100 | 80 | 77 | 93 | 84 | 82 | 87.6 | 100 | 85 | 82 | 1.3 | 0.58 | 0.59 | 0.58 | 0.86 | 0.77 | 0.72 | 100.0 | 5.0 | 6.0 |
sec | 2002_06 | dssp | 1l2p:A | 95.1 | 100 | 95 | 0 | 0 | 0 | 0 | 95.1 | 100 | 100 | 0 | 0.0 | 0.00 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 100.0 | 4.0 | 0.00 |
sec | 2002_06 | dssp | 1l2r:A | 70.0 | 73 | 78 | 32 | 61 | 80 | 64 | 64.4 | 73 | 36 | 63 | 4.3 | 0.22 | 0.21 | 0.23 | 0.56 | 0.38 | 0.49 | 100.0 | 3.0 | 6.0 |
sec | 2002_06 | dssp | 1l6p:A | 70.2 | 57 | 66 | 61 | 84 | 87 | 58 | 57.7 | 57 | 54 | 64 | 4.1 | 0.26 | 0.27 | 0.27 | 0.59 | 0.44 | 0.52 | 100.0 | 0.00 | 16.0 |
sec | 2002_06 | dssp | 1l8r:A | 81.2 | 90 | 90 | 75 | 78 | 73 | 71 | 82.9 | 91 | 86 | 69 | 0.0 | 0.51 | 0.51 | 0.51 | 0.83 | 0.69 | 0.58 | 100.0 | 0.00 | 0.00 |
sec | 2002_06 | dssp | 1l8y:A | 83.1 | 94 | 85 | 0 | 0 | 57 | 83 | 47.8 | 42 | 100 | 58 | 0.0 | 0.34 | 0.34 | 0.34 | 0.65 | 1.0 | 0.59 | 100.0 | 7.0 | 2.0 |
sec | 2002_06 | dssp | 1l9v:A | 73.2 | 88 | 77 | 54 | 57 | 64 | 73 | 67.4 | 78 | 61 | 59 | 1.9 | 0.31 | 0.31 | 0.32 | 0.69 | 0.48 | 0.48 | 100.0 | 6.0 | 0.00 |
sec | 2002_06 | dssp | 1ls7:A | 64.8 | 66 | 73 | 0 | 0 | 62 | 53 | 50.3 | 50 | 100 | 50 | 0.0 | 0.05 | 0.06 | 0.06 | 0.28 | 1.0 | 0.28 | 100.0 | 6.0 | 0.00 |
sec | 2002_06 | dssp | THIS_month:psum | 78.3 | 74 | 69 | 38 | 51 | 69 | 68 | 70.9 | 80.1 | 77.9 | 61.8 | 2.1 | 0.33 | 0.34 | 0.33 | 0.66 | 0.73 | 0.60 | 92.8 | 5.7 | 5.9 |
sec | 2002_06 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_06 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |