METHOD about: | ../../../doc/explain_methods.html#PX_about_prospect |
METHOD url: | Prospect |
TYPE : | sec |
NPROT : | 103 |
NWEEKS : | 20 |
NOTE 1 : | here ALL results obtained for Prospect in month 2002_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_06 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_06 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
sec | 2002_06 | dssp | THIS_month:psum | 65.8 | 57 | 57 | 30 | 44 | 76 | 61 | 58.8 | 65.3 | 63.7 | 57.9 | 4.5 | 0.28 | 0.28 | 0.28 | 0.53 | 0.66 | 0.41 | 87.5 | 10.6 | 11.2 |
sec | 2002_06 | dssp | 1gr8:A | 79.6 | 89 | 84 | 48 | 75 | 81 | 75 | 75.3 | 88 | 58 | 68 | 1.9 | 0.41 | 0.40 | 0.43 | 0.77 | 0.54 | 0.62 | 100.0 | 2.0 | 5.0 |
sec | 2002_06 | dssp | 1gty:A | 75.0 | 0 | 0 | 56 | 92 | 94 | 67 | 68.4 | 100 | 65 | 71 | 0.0 | 0.26 | 0.25 | 0.28 | 1.0 | 0.54 | 0.54 | 0.0 | 0.00 | 19.0 |
sec | 2002_06 | dssp | 1gw5:B | 74.4 | 86 | 77 | 0 | 0 | 53 | 70 | 70.0 | 86 | 100 | 45 | 0.6 | 0.14 | 0.15 | 0.15 | 0.44 | 1.0 | 0.43 | 100.0 | 7.0 | 1.0 |
sec | 2002_06 | dssp | 1gw5:S | 87.3 | 96 | 87 | 81 | 96 | 77 | 79 | 85.3 | 90 | 89 | 73 | 0.7 | 0.61 | 0.61 | 0.63 | 0.84 | 0.85 | 0.70 | 100.0 | 4.0 | 4.0 |
sec | 2002_06 | dssp | 1jy4:A | 25.7 | 0 | 0 | 0 | 0 | 81 | 36 | 9.9 | 100 | 0 | 31 | 22.8 | 0.02 | 0.02 | 0.02 | 1.0 | 1.0 | 0.15 | 100.0 | 28.0 | 68.0 |
sec | 2002_06 | dssp | 1k8v:A | 69.2 | 82 | 66 | 0 | 0 | 59 | 81 | 44.6 | 100 | 100 | 28 | 0.0 | 0.19 | 0.21 | 0.17 | 0.50 | 1.0 | 0.41 | 100.0 | 10.0 | 5.0 |
sec | 2002_06 | dssp | 1kmd:A | 42.7 | 2 | 7 | 31 | 50 | 74 | 46 | 24.0 | 2 | 28 | 33 | 1.7 | 0.11 | 0.09 | 0.14 | -0.20 | 0.32 | -0.14 | 100.0 | 24.0 | 5.0 |
sec | 2002_06 | dssp | 1kw4:A | 85.7 | 82 | 95 | 0 | 0 | 91 | 73 | 81.9 | 83 | 100 | 78 | 0.0 | 0.42 | 0.44 | 0.41 | 0.71 | 1.0 | 0.71 | 100.0 | 8.0 | 0.00 |
sec | 2002_06 | dssp | 1l1o:C | 85.5 | 93 | 88 | 79 | 94 | 85 | 76 | 89.5 | 100 | 89 | 80 | 0.0 | 0.60 | 0.60 | 0.60 | 0.87 | 0.79 | 0.69 | 100.0 | 1.0 | 5.0 |
sec | 2002_06 | dssp | 1l2p:A | 95.1 | 94 | 100 | 0 | 0 | 100 | 50 | 68.5 | 68 | 100 | 83 | 0.0 | 0.52 | 0.65 | 0.40 | 0.68 | 1.0 | 0.68 | 100.0 | 4.0 | 0.00 |
sec | 2002_06 | dssp | 1l2r:A | 63.9 | 65 | 76 | 23 | 37 | 76 | 59 | 58.9 | 68 | 24 | 58 | 5.9 | 0.14 | 0.14 | 0.15 | 0.49 | 0.20 | 0.41 | 100.0 | 6.0 | 5.0 |
sec | 2002_06 | dssp | 1l2w:I | 57.9 | 94 | 51 | 0 | 0 | 58 | 65 | 53.1 | 77 | 0 | 59 | 5.2 | 0.19 | 0.16 | 0.24 | 0.52 | 1.0 | 0.26 | 100.0 | 24.0 | 19.0 |
sec | 2002_06 | dssp | 1l3a:C | 73.6 | 76 | 90 | 56 | 87 | 90 | 61 | 65.1 | 63 | 64 | 67 | 1.0 | 0.40 | 0.39 | 0.42 | 0.79 | 0.57 | 0.54 | 100.0 | 3.0 | 14.0 |
sec | 2002_06 | dssp | 1l6p:A | 58.7 | 28 | 20 | 42 | 91 | 92 | 49 | 44.6 | 18 | 39 | 61 | 6.6 | 0.17 | 0.17 | 0.17 | 0.18 | 0.39 | 0.43 | 100.0 | 2.0 | 32.0 |
sec | 2002_06 | dssp | 1l8r:A | 77.2 | 76 | 86 | 79 | 86 | 76 | 63 | 85.8 | 88 | 97 | 73 | 0.0 | 0.44 | 0.45 | 0.45 | 0.69 | 0.77 | 0.52 | 100.0 | 4.0 | 1.0 |
sec | 2002_06 | dssp | 1l8y:A | 90.4 | 92 | 92 | 0 | 0 | 84 | 84 | 88.7 | 94 | 100 | 75 | 0.0 | 0.50 | 0.50 | 0.50 | 0.77 | 1.0 | 0.77 | 100.0 | 0.00 | 0.00 |
sec | 2002_06 | dssp | 1l9v:A | 72.5 | 74 | 83 | 66 | 61 | 72 | 67 | 66.0 | 81 | 67 | 54 | 1.2 | 0.31 | 0.31 | 0.31 | 0.64 | 0.57 | 0.47 | 100.0 | 4.0 | 1.0 |
sec | 2002_06 | dssp | 1lf7:A | 61.9 | 0 | 0 | 53 | 88 | 94 | 64 | 52.2 | 0 | 60 | 67 | 11.9 | 0.44 | 0.40 | 0.48 | -0.17 | 0.57 | 0.54 | 100.0 | 7.0 | 14.0 |
sec | 2002_06 | dssp | 1ln1:A | 76.4 | 77 | 76 | 72 | 92 | 80 | 64 | 81.9 | 79 | 91 | 72 | 1.4 | 0.40 | 0.41 | 0.41 | 0.69 | 0.71 | 0.54 | 100.0 | 0.00 | 8.0 |
sec | 2002_06 | dssp | 1lq7:A | 34.3 | 25 | 68 | 0 | 0 | 62 | 20 | 28.8 | 28 | 100 | 29 | 0.0 | 0.01 | 0.01 | 0.01 | -0.11 | 1.0 | -0.11 | 0.0 | 47.0 | 0.00 |
sec | 2002_06 | dssp | 1lqv:B | 65.9 | 89 | 63 | 33 | 95 | 78 | 58 | 64.7 | 86 | 39 | 76 | 11.5 | 0.28 | 0.27 | 0.30 | 0.60 | 0.46 | 0.51 | 0.0 | 13.0 | 23.0 |
sec | 2002_06 | dssp | 1ls7:A | 63.2 | 58 | 76 | 0 | 0 | 70 | 51 | 62.9 | 70 | 100 | 50 | 0.0 | 0.06 | 0.06 | 0.06 | 0.28 | 1.0 | 0.28 | 100.0 | 14.0 | 0.00 |
sec | 2002_06 | dssp | 1lub:A | 28.0 | 0 | 0 | 0 | 0 | 53 | 53 | 12.4 | 0 | 0 | 19 | 24.0 | 0.12 | 0.11 | 0.15 | 1.0 | -0.35 | 0.03 | 100.0 | 36.0 | 36.0 |
sec | 2002_06 | dssp | 1luo:A | 37.0 | 0 | 0 | 21 | 25 | 54 | 56 | 29.8 | 0 | 19 | 40 | 13.3 | 0.04 | 0.04 | 0.04 | -0.21 | -0.03 | -0.00 | 100.0 | 7.0 | 4.0 |
sec | 2002_06 | dssp | THIS_month:psum | 65.8 | 57 | 57 | 30 | 44 | 76 | 61 | 58.8 | 65.3 | 63.7 | 57.9 | 4.5 | 0.28 | 0.28 | 0.28 | 0.53 | 0.66 | 0.41 | 87.5 | 10.6 | 11.2 |
sec | 2002_06 | dssp | ALL_proteins:psum | 71.7 | 77 | 77 | 57 | 72 | 75 | 67 | 67.6 | 72.6 | 68.1 | 64.9 | 2.8 | 0.32 | 0.32 | 0.32 | 0.63 | 0.56 | 0.49 | 8543.6 | 8.4 | 7.5 |
sec | 2002_06 | dssp | ALL_proteins:sig | 13.8 | 33 | 34 | 35 | 44 | 14 | 14 | 18.8 | 28.1 | 31.0 | 17.4 | 4.5 | 0.17 | 0.17 | 0.17 | 0.29 | 0.30 | 0.21 | 8499.6 | 9.5 | 9.9 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 1.3 | 3 | 3 | 3 | 4 | 1 | 1 | 1.8 | 2.7 | 3.0 | 1.7 | 0.45 | 0.01 | 0.01 | 0.01 | 0.02 | 0.03 | 0.02 | 837.4 | 0.93 | 0.98 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |