METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2002_06 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_06 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2002_06 | dssp | THIS_month:psum | 71.6 | 61 | 69 | 33 | 44 | 80 | 63 | 65.3 | 64.8 | 70.1 | 65.3 | 2.3 | 0.32 | 0.31 | 0.32 | 0.65 | 0.66 | 0.48 | 86.3 | 7.5 | 7.9 |
sec | 2002_06 | dssp | 1gr8:A | 76.2 | 72 | 93 | 51 | 79 | 89 | 65 | 68.4 | 78 | 60 | 60 | 0.2 | 0.40 | 0.38 | 0.42 | 0.72 | 0.58 | 0.56 | 100.0 | 9.0 | 5.0 |
sec | 2002_06 | dssp | 1gty:A | 77.5 | 0 | 0 | 63 | 89 | 92 | 70 | 77.7 | 100 | 71 | 84 | 0.0 | 0.27 | 0.27 | 0.28 | 1.0 | 0.57 | 0.57 | 0.0 | 0.00 | 14.0 |
sec | 2002_06 | dssp | 1gw5:B | 80.8 | 88 | 83 | 0 | 0 | 66 | 77 | 81.4 | 91 | 100 | 65 | 0.1 | 0.27 | 0.28 | 0.27 | 0.60 | 1.0 | 0.57 | 100.0 | 3.0 | 1.0 |
sec | 2002_06 | dssp | 1gw5:S | 88.7 | 93 | 95 | 75 | 93 | 92 | 77 | 89.0 | 91 | 84 | 89 | 1.4 | 0.64 | 0.64 | 0.65 | 0.90 | 0.79 | 0.77 | 100.0 | 0.00 | 4.0 |
sec | 2002_06 | dssp | 1k8v:A | 87.2 | 88 | 88 | 0 | 0 | 86 | 90 | 75.4 | 100 | 100 | 65 | 0.0 | 0.48 | 0.52 | 0.45 | 0.79 | 1.0 | 0.74 | 100.0 | 0.00 | 2.0 |
sec | 2002_06 | dssp | 1kmd:A | 80.3 | 85 | 81 | 31 | 83 | 89 | 79 | 74.4 | 76 | 37 | 82 | 2.5 | 0.40 | 0.37 | 0.43 | 0.74 | 0.47 | 0.66 | 100.0 | 1.0 | 8.0 |
sec | 2002_06 | dssp | 1kw4:A | 75.7 | 80 | 82 | 0 | 0 | 66 | 64 | 74.6 | 79 | 100 | 65 | 0.0 | 0.16 | 0.17 | 0.17 | 0.46 | 1.0 | 0.46 | 100.0 | 1.0 | 0.00 |
sec | 2002_06 | dssp | 1l1o:C | 80.3 | 87 | 87 | 71 | 91 | 83 | 68 | 83.3 | 100 | 82 | 70 | 0.0 | 0.51 | 0.51 | 0.52 | 0.82 | 0.72 | 0.59 | 100.0 | 0.00 | 8.0 |
sec | 2002_06 | dssp | 1l2p:A | 93.4 | 93 | 100 | 0 | 0 | 100 | 42 | 70.6 | 69 | 100 | 100 | 0.0 | 0.46 | 0.60 | 0.33 | 0.63 | 1.0 | 0.63 | 100.0 | 6.0 | 0.00 |
sec | 2002_06 | dssp | 1l2r:A | 61.3 | 52 | 84 | 46 | 33 | 76 | 59 | 57.7 | 59 | 37 | 63 | 8.3 | 0.15 | 0.16 | 0.15 | 0.49 | 0.27 | 0.40 | 100.0 | 17.0 | 5.0 |
sec | 2002_06 | dssp | 1l2w:I | 54.4 | 76 | 48 | 0 | 0 | 62 | 60 | 47.3 | 66 | 0 | 53 | 5.2 | 0.09 | 0.08 | 0.11 | 0.37 | 1.0 | 0.19 | 100.0 | 17.0 | 19.0 |
sec | 2002_06 | dssp | 1l3a:C | 65.9 | 47 | 100 | 47 | 83 | 95 | 54 | 59.5 | 45 | 66 | 62 | 2.1 | 0.30 | 0.27 | 0.34 | 0.64 | 0.47 | 0.48 | 100.0 | 10.0 | 17.0 |
sec | 2002_06 | dssp | 1l6p:A | 53.7 | 42 | 60 | 32 | 92 | 92 | 42 | 37.2 | 34 | 35 | 40 | 0.8 | 0.15 | 0.14 | 0.17 | 0.48 | 0.34 | 0.30 | 100.0 | 1.0 | 38.0 |
sec | 2002_06 | dssp | 1l8r:A | 70.3 | 72 | 88 | 58 | 77 | 76 | 54 | 78.9 | 89 | 70 | 71 | 0.0 | 0.35 | 0.35 | 0.36 | 0.67 | 0.59 | 0.41 | 0.0 | 7.0 | 5.0 |
sec | 2002_06 | dssp | 1l8y:A | 88.0 | 92 | 89 | 0 | 0 | 76 | 83 | 50.2 | 45 | 100 | 61 | 0.0 | 0.42 | 0.41 | 0.43 | 0.71 | 1.0 | 0.71 | 100.0 | 2.0 | 0.00 |
sec | 2002_06 | dssp | 1l9v:A | 70.3 | 61 | 90 | 62 | 57 | 81 | 63 | 66.2 | 68 | 65 | 64 | 2.2 | 0.28 | 0.28 | 0.29 | 0.61 | 0.52 | 0.47 | 100.0 | 13.0 | 1.0 |
sec | 2002_06 | dssp | 1lf7:A | 71.4 | 0 | 0 | 86 | 86 | 89 | 62 | 67.0 | 0 | 100 | 69 | 0.0 | 0.44 | 0.34 | 0.55 | 1.0 | 0.79 | 0.47 | 100.0 | 19.0 | 0.00 |
sec | 2002_06 | dssp | 1ln1:A | 84.2 | 85 | 89 | 78 | 97 | 90 | 71 | 88.7 | 90 | 93 | 81 | 0.0 | 0.57 | 0.58 | 0.58 | 0.83 | 0.80 | 0.68 | 100.0 | 0.00 | 7.0 |
sec | 2002_06 | dssp | 1lq7:A | 91.0 | 90 | 97 | 0 | 0 | 93 | 75 | 98.9 | 100 | 100 | 95 | 0.0 | 0.53 | 0.56 | 0.51 | 0.78 | 1.0 | 0.78 | 100.0 | 5.0 | 0.00 |
sec | 2002_06 | dssp | 1ls7:A | 60.8 | 54 | 75 | 0 | 0 | 70 | 49 | 45.1 | 47 | 100 | 41 | 0.0 | 0.04 | 0.05 | 0.04 | 0.24 | 1.0 | 0.24 | 0.0 | 16.0 | 0.00 |
sec | 2002_06 | dssp | 1lub:A | 26.0 | 0 | 0 | 16 | 3 | 46 | 50 | 17.3 | 0 | 16 | 24 | 22.0 | 0.04 | 0.04 | 0.06 | 1.0 | -0.26 | -0.03 | 100.0 | 36.0 | 40.0 |
sec | 2002_06 | dssp | 1luo:A | 38.2 | 0 | 0 | 25 | 26 | 54 | 51 | 28.7 | 0 | 27 | 34 | 6.6 | 0.03 | 0.03 | 0.04 | -0.15 | -0.03 | -0.13 | 100.0 | 2.0 | 0.00 |
sec | 2002_06 | dssp | THIS_month:psum | 71.6 | 61 | 69 | 33 | 44 | 80 | 63 | 65.3 | 64.8 | 70.1 | 65.3 | 2.3 | 0.32 | 0.31 | 0.32 | 0.65 | 0.66 | 0.48 | 86.3 | 7.5 | 7.9 |
sec | 2002_06 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_06 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_06 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |