METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_04 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_04 | dssp | THIS_month:psum | 76.0 | 73 | 68 | 46 | 55 | 74 | 73 | 69.8 | 76.2 | 76.9 | 65.4 | 2.1 | 0.38 | 0.38 | 0.38 | 0.65 | 0.70 | 0.55 | 81.8 | 6.6 | 6.5 |
sec | 2002_04 | dssp | 1ich:A | 78.2 | 82 | 86 | 0 | 0 | 65 | 71 | 78.6 | 81 | 100 | 70 | 5.7 | 0.24 | 0.28 | 0.21 | 0.46 | 1.0 | 0.57 | 0.0 | 3.0 | 5.0 |
sec | 2002_04 | dssp | 1icz:A | 47.4 | 81 | 29 | 40 | 18 | 39 | 84 | 33.2 | 49 | 30 | 30 | 2.0 | 0.07 | 0.08 | 0.06 | 0.28 | 0.20 | 0.17 | 100.0 | 33.0 | 6.0 |
sec | 2002_04 | dssp | 1jki:A | 74.5 | 74 | 81 | 58 | 80 | 85 | 67 | 70.9 | 75 | 65 | 70 | 3.8 | 0.33 | 0.33 | 0.34 | 0.66 | 0.60 | 0.57 | 0.0 | 3.0 | 7.0 |
sec | 2002_04 | dssp | 1jww:A | 81.2 | 95 | 95 | 80 | 65 | 72 | 83 | 78.2 | 100 | 86 | 63 | 0.0 | 0.56 | 0.57 | 0.55 | 0.93 | 0.61 | 0.62 | 100.0 | 0.00 | 6.0 |
sec | 2002_04 | dssp | 1jyh:A | 76.1 | 80 | 76 | 69 | 87 | 80 | 67 | 78.2 | 88 | 83 | 67 | 2.5 | 0.38 | 0.39 | 0.39 | 0.71 | 0.66 | 0.56 | 100.0 | 1.0 | 8.0 |
sec | 2002_04 | dssp | 1k1v:A | 90.2 | 100 | 87 | 0 | 0 | 69 | 100 | 81.4 | 83 | 100 | 76 | 0.0 | 0.57 | 0.53 | 0.63 | 0.77 | 1.0 | 0.77 | 100.0 | 9.0 | 0.00 |
sec | 2002_04 | dssp | 1k2e:A | 76.3 | 97 | 78 | 61 | 79 | 74 | 71 | 75.5 | 100 | 63 | 69 | 5.2 | 0.43 | 0.43 | 0.43 | 0.81 | 0.55 | 0.59 | 0.0 | 7.0 | 8.0 |
sec | 2002_04 | dssp | 1k3b:A | 75.6 | 75 | 37 | 61 | 97 | 94 | 67 | 81.9 | 100 | 78 | 84 | 2.5 | 0.34 | 0.36 | 0.34 | 0.50 | 0.62 | 0.60 | 0.0 | 3.0 | 20.0 |
sec | 2002_04 | dssp | 1k3k:A | 80.8 | 86 | 83 | 0 | 0 | 70 | 88 | 71.2 | 72 | 100 | 69 | 4.7 | 0.36 | 0.39 | 0.33 | 0.58 | 1.0 | 0.69 | 100.0 | 2.0 | 4.0 |
sec | 2002_04 | dssp | 1k81:A | 72.2 | 0 | 0 | 52 | 100 | 94 | 66 | 72.3 | 100 | 68 | 76 | 2.7 | 0.31 | 0.33 | 0.29 | 1.0 | 0.58 | 0.55 | 100.0 | 5.0 | 25.0 |
sec | 2002_04 | dssp | 1k8b:A | 76.9 | 95 | 76 | 50 | 100 | 84 | 64 | 75.4 | 100 | 50 | 70 | 7.6 | 0.45 | 0.44 | 0.46 | 0.74 | 0.62 | 0.63 | 100.0 | 9.0 | 17.0 |
sec | 2002_04 | dssp | 1ksk:A | 81.2 | 90 | 78 | 86 | 74 | 74 | 87 | 78.9 | 91 | 87 | 70 | 0.8 | 0.47 | 0.49 | 0.47 | 0.79 | 0.71 | 0.64 | 100.0 | 3.0 | 4.0 |
sec | 2002_04 | dssp | 1ku3:A | 85.2 | 94 | 82 | 0 | 0 | 72 | 90 | 77.5 | 100 | 100 | 54 | 0.0 | 0.40 | 0.39 | 0.41 | 0.69 | 1.0 | 0.69 | 100.0 | 8.0 | 0.00 |
sec | 2002_04 | dssp | 1kv8:B | 88.8 | 84 | 94 | 93 | 95 | 92 | 78 | 92.3 | 93 | 88 | 93 | 0.9 | 0.65 | 0.66 | 0.65 | 0.80 | 0.92 | 0.78 | 100.0 | 5.0 | 0.00 |
sec | 2002_04 | dssp | 1kxl:A | 61.0 | 82 | 43 | 71 | 71 | 48 | 78 | 39.2 | 64 | 83 | 26 | 2.1 | 0.24 | 0.25 | 0.23 | 0.41 | 0.64 | 0.32 | 100.0 | 21.0 | 0.00 |
sec | 2002_04 | dssp | 1ky9:B | 74.5 | 70 | 87 | 57 | 100 | 95 | 61 | 79.9 | 100 | 57 | 93 | 0.0 | 0.46 | 0.43 | 0.49 | 0.73 | 0.66 | 0.56 | 100.0 | 3.0 | 17.0 |
sec | 2002_04 | dssp | 1l0o:A | 82.3 | 87 | 88 | 85 | 80 | 75 | 76 | 82.1 | 88 | 84 | 73 | 0.0 | 0.52 | 0.52 | 0.52 | 0.80 | 0.77 | 0.62 | 100.0 | 0.00 | 1.0 |
sec | 2002_04 | dssp | 1l0o:C | 87.7 | 90 | 100 | 0 | 0 | 85 | 70 | 66.1 | 67 | 0 | 66 | 0.0 | 0.60 | 0.65 | 0.56 | 0.84 | -0.02 | 0.69 | 100.0 | 7.0 | 1.0 |
sec | 2002_04 | dssp | 1l3y:A | 85.4 | 0 | 0 | 87 | 87 | 96 | 84 | 70.3 | 0 | 100 | 71 | 0.0 | 0.51 | 0.40 | 0.64 | 1.0 | 0.84 | 0.63 | 100.0 | 9.0 | 0.00 |
sec | 2002_04 | dssp | 1l7j:A | 72.8 | 42 | 73 | 65 | 79 | 84 | 68 | 67.9 | 53 | 70 | 67 | 1.1 | 0.26 | 0.25 | 0.28 | 0.53 | 0.53 | 0.49 | 100.0 | 3.0 | 7.0 |
sec | 2002_04 | dssp | 1l8c:B | 64.7 | 42 | 53 | 0 | 0 | 78 | 75 | 56.9 | 42 | 100 | 63 | 5.8 | 0.13 | 0.15 | 0.12 | 0.21 | 1.0 | 0.36 | 100.0 | 7.0 | 5.0 |
sec | 2002_04 | dssp | 1l8m:A | 60.1 | 77 | 70 | 0 | 0 | 22 | 32 | 28.7 | 32 | 100 | 19 | 0.0 | 0.04 | 0.05 | 0.05 | 0.09 | 1.0 | 0.00 | 100.0 | 6.0 | 2.0 |
sec | 2002_04 | dssp | THIS_month:psum | 76.0 | 73 | 68 | 46 | 55 | 74 | 73 | 69.8 | 76.2 | 76.9 | 65.4 | 2.1 | 0.38 | 0.38 | 0.38 | 0.65 | 0.70 | 0.55 | 81.8 | 6.6 | 6.5 |
sec | 2002_04 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |