METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2002_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_04 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_04 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2002_04 | dssp | THIS_month:psum | 71.3 | 72 | 63 | 45 | 57 | 68 | 72 | 65.6 | 69.2 | 74.9 | 62.1 | 1.7 | 0.32 | 0.31 | 0.33 | 0.64 | 0.65 | 0.45 | 94.1 | 8.8 | 6.5 |
sec | 2002_04 | dssp | 1gqw:A | 76.5 | 76 | 76 | 65 | 85 | 84 | 73 | 73.2 | 78 | 71 | 71 | 2.1 | 0.37 | 0.37 | 0.38 | 0.67 | 0.66 | 0.58 | 100.0 | 0.00 | 6.0 |
sec | 2002_04 | dssp | 1icz:A | 45.4 | 81 | 28 | 33 | 15 | 37 | 84 | 32.0 | 47 | 24 | 30 | 2.4 | 0.05 | 0.07 | 0.05 | 0.26 | 0.15 | 0.15 | 100.0 | 34.0 | 6.0 |
sec | 2002_04 | dssp | 1jww:A | 87.5 | 100 | 95 | 85 | 75 | 80 | 90 | 92.7 | 100 | 91 | 88 | 0.0 | 0.67 | 0.68 | 0.66 | 0.97 | 0.72 | 0.74 | 100.0 | 1.0 | 3.0 |
sec | 2002_04 | dssp | 1jyh:A | 79.4 | 86 | 81 | 69 | 95 | 85 | 68 | 83.5 | 87 | 90 | 73 | 0.6 | 0.48 | 0.48 | 0.49 | 0.78 | 0.72 | 0.60 | 100.0 | 1.0 | 10.0 |
sec | 2002_04 | dssp | 1k1v:A | 87.8 | 100 | 84 | 0 | 0 | 61 | 100 | 79.0 | 83 | 100 | 69 | 0.0 | 0.51 | 0.45 | 0.57 | 0.72 | 1.0 | 0.72 | 100.0 | 12.0 | 0.00 |
sec | 2002_04 | dssp | 1k2e:A | 67.8 | 77 | 89 | 57 | 75 | 70 | 51 | 71.3 | 91 | 72 | 52 | 0.0 | 0.36 | 0.36 | 0.37 | 0.77 | 0.49 | 0.34 | 100.0 | 3.0 | 8.0 |
sec | 2002_04 | dssp | 1k3b:A | 80.7 | 75 | 100 | 67 | 97 | 98 | 69 | 79.6 | 100 | 76 | 82 | 0.0 | 0.46 | 0.45 | 0.47 | 0.86 | 0.67 | 0.66 | 0.0 | 0.00 | 16.0 |
sec | 2002_04 | dssp | 1k3k:A | 80.8 | 94 | 78 | 0 | 0 | 58 | 86 | 76.2 | 76 | 100 | 75 | 0.0 | 0.29 | 0.27 | 0.31 | 0.58 | 1.0 | 0.58 | 100.0 | 12.0 | 0.00 |
sec | 2002_04 | dssp | 1k81:A | 58.3 | 0 | 0 | 31 | 75 | 88 | 60 | 54.2 | 100 | 36 | 73 | 8.3 | 0.13 | 0.14 | 0.12 | 1.0 | 0.23 | 0.38 | 100.0 | 8.0 | 30.0 |
sec | 2002_04 | dssp | 1k8b:A | 76.9 | 100 | 91 | 44 | 100 | 84 | 52 | 74.8 | 100 | 55 | 60 | 0.0 | 0.63 | 0.62 | 0.66 | 0.92 | 0.58 | 0.52 | 100.0 | 3.0 | 19.0 |
sec | 2002_04 | dssp | 1ksk:A | 76.9 | 92 | 75 | 73 | 70 | 71 | 82 | 79.6 | 91 | 79 | 75 | 1.2 | 0.40 | 0.41 | 0.40 | 0.77 | 0.61 | 0.56 | 100.0 | 5.0 | 1.0 |
sec | 2002_04 | dssp | 1kxl:A | 56.1 | 91 | 40 | 62 | 64 | 38 | 82 | 40.5 | 44 | 59 | 34 | 4.2 | 0.20 | 0.21 | 0.20 | 0.41 | 0.55 | 0.30 | 100.0 | 30.0 | 0.00 |
sec | 2002_04 | dssp | 1l0o:A | 68.8 | 62 | 72 | 64 | 68 | 77 | 66 | 67.4 | 74 | 62 | 63 | 7.8 | 0.23 | 0.24 | 0.24 | 0.49 | 0.56 | 0.52 | 100.0 | 4.0 | 1.0 |
sec | 2002_04 | dssp | 1l3y:A | 78.0 | 0 | 0 | 62 | 71 | 93 | 79 | 68.3 | 0 | 87 | 70 | 0.0 | 0.26 | 0.19 | 0.33 | 1.0 | 0.59 | 0.42 | 100.0 | 9.0 | 2.0 |
sec | 2002_04 | dssp | 1l7j:A | 72.5 | 57 | 55 | 67 | 80 | 79 | 69 | 69.2 | 45 | 72 | 69 | 1.1 | 0.25 | 0.25 | 0.25 | 0.52 | 0.55 | 0.47 | 100.0 | 0.00 | 7.0 |
sec | 2002_04 | dssp | 1l8c:B | 51.0 | 42 | 36 | 0 | 0 | 56 | 64 | 49.4 | 33 | 100 | 58 | 1.9 | 0.02 | 0.03 | 0.03 | -0.01 | 1.0 | 0.03 | 100.0 | 5.0 | 1.0 |
sec | 2002_04 | dssp | 1l8m:A | 69.0 | 95 | 71 | 0 | 0 | 12 | 57 | 25.2 | 29 | 100 | 15 | 0.0 | 0.06 | 0.05 | 0.09 | 0.21 | 1.0 | 0.14 | 100.0 | 23.0 | 1.0 |
sec | 2002_04 | dssp | THIS_month:psum | 71.3 | 72 | 63 | 45 | 57 | 68 | 72 | 65.6 | 69.2 | 74.9 | 62.1 | 1.7 | 0.32 | 0.31 | 0.33 | 0.64 | 0.65 | 0.45 | 94.1 | 8.8 | 6.5 |
sec | 2002_04 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_04 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |