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EVA sec results for: PSIpred month: 2002_04

METHOD about:	../../../doc/explain_methods.html#PX_about_psipred
METHOD url:	PSIpred
TYPE :	sec
NPROT :	1461
NWEEKS :	111
NOTE 1 :	here ALL results obtained for PSIpred in month 2002_04 are given, i.e. NOT those for a common subset!
NOTE 2 :	all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure!

Averages over all proteins month 2002_04 1

type	date	sots	id	Q3	Q3H%o	Q3H%p	Q3E%o	Q3E%p	Q3L%o	Q3L%p	sov	sovH	sovE	sovL	BAD	info	infoO	infoP	corrH	corrE	corrL	class	contDH	contDE

sec	2002_04	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_04	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_04	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15
sec	2002_04	dssp	THIS_month:psum	76.2	73	67	45	55	75	76	72.6	76.4	75.9	68	2.2	0.39	0.38	0.39	0.66	0.70	0.56	81.8	8.3	6.6

sec	2002_04	dssp	1ich:A	86.2	93	88	0	0	65	78	81.7	86	100	67	0.0	0.33	0.32	0.35	0.62	1.0	0.62	100.0	4.0	0.00
sec	2002_04	dssp	1icz:A	46.2	87	30	53	24	34	85	33.8	56	38	29	0.8	0.11	0.13	0.10	0.30	0.29	0.16	100.0	36.0	7.0
sec	2002_04	dssp	1jki:A	78.9	81	88	63	84	86	70	74.3	83	67	71	1.7	0.43	0.42	0.44	0.77	0.65	0.61	0.0	2.0	6.0
sec	2002_04	dssp	1jww:A	87.5	95	95	85	78	83	88	92.0	100	91	87	0.0	0.63	0.64	0.63	0.93	0.75	0.74	100.0	0.00	2.0
sec	2002_04	dssp	1jyh:A	79.4	88	80	66	100	87	67	81.1	88	82	74	0.6	0.52	0.52	0.53	0.79	0.73	0.61	100.0	2.0	13.0
sec	2002_04	dssp	1k1v:A	92.7	100	90	0	0	76	100	83.8	83	100	84	0.0	0.65	0.61	0.69	0.83	1.0	0.83	100.0	7.0	0.00
sec	2002_04	dssp	1k2e:A	69.1	97	69	52	75	62	64	58.9	89	50	41	6.5	0.33	0.34	0.34	0.73	0.46	0.45	0.0	11.0	11.0
sec	2002_04	dssp	1k3b:A	79.8	50	28	72	94	92	74	87.0	75	86	89	3.3	0.36	0.38	0.35	0.34	0.67	0.67	0.0	2.0	12.0
sec	2002_04	dssp	1k3k:A	78.1	87	79	0	0	61	87	72.7	79	100	64	4.1	0.29	0.31	0.28	0.52	1.0	0.61	100.0	6.0	4.0
sec	2002_04	dssp	1k81:A	77.8	0	0	57	100	100	68	72.7	100	68	77	0.0	0.39	0.37	0.42	1.0	0.62	0.62	100.0	0.00	22.0
sec	2002_04	dssp	1k8b:A	78.8	95	76	55	100	84	68	80.2	91	66	80	7.6	0.47	0.46	0.48	0.74	0.67	0.67	100.0	9.0	15.0
sec	2002_04	dssp	1ksk:A	81.2	90	75	84	76	75	88	86.0	90	82	85	1.2	0.47	0.48	0.46	0.77	0.72	0.65	100.0	4.0	2.0
sec	2002_04	dssp	1ku3:A	86.9	94	85	0	0	76	90	78.0	100	100	55	0.0	0.44	0.43	0.45	0.72	1.0	0.72	100.0	6.0	0.00
sec	2002_04	dssp	1kv8:B	86.0	87	90	76	86	89	80	93.1	94	88	94	3.7	0.53	0.53	0.53	0.78	0.77	0.77	100.0	1.0	2.0
sec	2002_04	dssp	1kxl:A	50.3	93	36	22	53	40	81	35.5	57	22	32	10.6	0.11	0.11	0.12	0.35	0.26	0.31	100.0	39.0	10.0
sec	2002_04	dssp	1ky9:B	76.5	70	87	61	100	95	63	87.0	100	71	96	0.0	0.48	0.46	0.50	0.73	0.69	0.59	100.0	3.0	15.0
sec	2002_04	dssp	1l0o:A	85.1	88	88	91	83	77	82	83.5	88	87	75	0.0	0.57	0.57	0.57	0.81	0.83	0.67	100.0	0.00	2.0
sec	2002_04	dssp	1l0o:C	84.2	90	100	0	0	71	83	92.1	100	0	75	5.2	0.59	0.68	0.51	0.84	-0.05	0.70	100.0	7.0	10.0
sec	2002_04	dssp	1l3y:A	82.9	0	0	87	77	93	84	67.6	0	100	67	0.0	0.43	0.35	0.52	1.0	0.77	0.56	100.0	9.0	2.0
sec	2002_04	dssp	1l7j:A	75.4	53	77	69	82	84	70	65.9	43	73	62	0.0	0.31	0.30	0.33	0.62	0.59	0.52	100.0	2.0	6.0
sec	2002_04	dssp	1l8c:B	64.7	42	53	0	0	78	73	56.2	42	100	62	3.9	0.10	0.11	0.09	0.21	1.0	0.31	100.0	7.0	3.0
sec	2002_04	dssp	1l8m:A	48.8	45	73	0	0	56	32	35.0	37	100	30	0.0	0.04	0.05	0.04	0.09	1.0	0.01	0.0	26.0	2.0

sec	2002_04	dssp	THIS_month:psum	76.2	73	67	45	55	75	76	72.6	76.4	75.9	68	2.2	0.39	0.38	0.39	0.66	0.70	0.56	81.8	8.3	6.6

sec	2002_04	dssp	ALL_proteins:psum	77.9	82	83	69	77	79	74	74.5	76.9	72.5	70.8	2.1	0.41	0.41	0.41	0.72	0.66	0.59	8323.0	5.5	4.9
sec	2002_04	dssp	ALL_proteins:sig	9.9	27	29	33	37	12	12	14.1	22.8	26.0	15.0	3.5	0.20	0.16	0.30	0.22	0.24	0.16	8242.7	6.8	6.0
sec	2002_04	dssp	ALL_proteins:errsig	0.25	0.71	0.76	0.88	0.97	0.32	0.32	0.37	0.59	0.68	0.39	0.09	0.00	0.00	0.00	0.00	0.00	0.00	215.6	0.17	0.15

Notations used (detailed explanation)

psum	percentage over all proteins
sig	standard deviation
errsig	significant difference (to distinguish between two methods)

type	prediction type
date	date when added [yyyy_mm_dd]
sots	standard of truth
id	identifier of protein
Q3	three-state per-residue accuracy (percentage of correctly predicted residues)
Q3H%o	correctly predicted helix residues (percentage of helix observed)
Q3H%p	correctly predicted helix residues (percentage of helix predicted)
Q3E%o	correctly predicted strand residues (percentage of helix observed)
Q3E%p	correctly predicted strand residues (percentage of helix predicted)
Q3L%o	correctly predicted loop residues (percentage of helix observed)
Q3L%p	correctly predicted loop residues (percentage of helix predicted)
sov	per segment accuracy (three states)
sovH	per segment accuracy for helix residues
sovE	per segment accuracy for strand residues
sovL	per segment accuracy for non-regular residues
BAD	percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix)
infoO	information index accuracy (percentage of observed)
infoP	information index accuracy (percentage of predicted)
corrH	Matthews correlation index for helix
corrE	Matthews correlation index for strand
corrL	Matthews correlation index for loop
var	variance over all proteins (1/N-1)( score(i) - )*2
sig	sigma (standard deviation) over all proteins (sqrt[var])
errsig	significant differences ( standard dev / sqrt(Nprot) )

Last update: 2002_04
Contact: rost@columbia.edu
WWW: http://cubic.bioc.columbia.edu/eva

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