METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2002_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_04 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2002_04 | dssp | THIS_month:psum | 73.3 | 59 | 69 | 30 | 45 | 85 | 68 | 69.5 | 64.6 | 72.4 | 67.7 | 1.2 | 0.35 | 0.33 | 0.36 | 0.73 | 0.67 | 0.51 | 81.2 | 8.6 | 6.5 |
sec | 2002_04 | dssp | 1ich:A | 93.1 | 93 | 96 | 0 | 0 | 91 | 84 | 96.6 | 100 | 100 | 87 | 0.0 | 0.59 | 0.60 | 0.58 | 0.82 | 1.0 | 0.82 | 100.0 | 2.0 | 0.00 |
sec | 2002_04 | dssp | 1jki:A | 73.5 | 71 | 80 | 52 | 82 | 88 | 66 | 67.0 | 73 | 57 | 68 | 4.5 | 0.32 | 0.31 | 0.34 | 0.64 | 0.57 | 0.58 | 0.0 | 3.0 | 9.0 |
sec | 2002_04 | dssp | 1jww:A | 78.8 | 86 | 95 | 66 | 70 | 80 | 74 | 85.4 | 100 | 73 | 82 | 0.0 | 0.48 | 0.48 | 0.49 | 0.87 | 0.57 | 0.57 | 100.0 | 2.0 | 1.0 |
sec | 2002_04 | dssp | 1jyh:A | 70.3 | 52 | 100 | 56 | 83 | 96 | 58 | 72.0 | 72 | 74 | 69 | 3.2 | 0.36 | 0.33 | 0.39 | 0.67 | 0.53 | 0.55 | 100.0 | 10.0 | 12.0 |
sec | 2002_04 | dssp | 1k1v:A | 92.7 | 96 | 93 | 0 | 0 | 84 | 91 | 83.9 | 83 | 100 | 84 | 0.0 | 0.59 | 0.58 | 0.60 | 0.82 | 1.0 | 0.82 | 100.0 | 2.0 | 0.00 |
sec | 2002_04 | dssp | 1k2e:A | 60.5 | 81 | 94 | 31 | 62 | 74 | 44 | 58.6 | 100 | 35 | 48 | 0.0 | 0.37 | 0.36 | 0.39 | 0.83 | 0.24 | 0.26 | 100.0 | 3.0 | 18.0 |
sec | 2002_04 | dssp | 1k3b:A | 77.3 | 0 | 0 | 66 | 97 | 98 | 65 | 82.2 | 0 | 87 | 81 | 0.0 | 0.36 | 0.33 | 0.41 | 1.0 | 0.66 | 0.61 | 0.0 | 3.0 | 17.0 |
sec | 2002_04 | dssp | 1k3k:A | 82.9 | 85 | 86 | 0 | 0 | 78 | 79 | 87.9 | 88 | 100 | 87 | 1.3 | 0.33 | 0.35 | 0.32 | 0.63 | 1.0 | 0.66 | 100.0 | 0.00 | 1.0 |
sec | 2002_04 | dssp | 1ku3:A | 85.2 | 94 | 82 | 0 | 0 | 72 | 90 | 78.0 | 100 | 100 | 55 | 0.0 | 0.40 | 0.39 | 0.41 | 0.69 | 1.0 | 0.69 | 100.0 | 8.0 | 0.00 |
sec | 2002_04 | dssp | 1kxl:A | 71.1 | 67 | 72 | 74 | 59 | 71 | 76 | 58.0 | 66 | 76 | 51 | 0.0 | 0.30 | 0.31 | 0.30 | 0.60 | 0.57 | 0.41 | 100.0 | 1.0 | 4.0 |
sec | 2002_04 | dssp | 1ky9:B | 66.7 | 40 | 100 | 47 | 100 | 100 | 54 | 70.0 | 60 | 57 | 88 | 0.0 | 0.38 | 0.32 | 0.45 | 0.59 | 0.59 | 0.49 | 100.0 | 11.0 | 21.0 |
sec | 2002_04 | dssp | 1l0o:A | 67.4 | 61 | 71 | 64 | 68 | 75 | 63 | 53.5 | 51 | 63 | 49 | 7.0 | 0.22 | 0.23 | 0.23 | 0.47 | 0.56 | 0.48 | 100.0 | 5.0 | 1.0 |
sec | 2002_04 | dssp | 1l0o:C | 84.2 | 88 | 100 | 0 | 0 | 78 | 68 | 93.9 | 100 | 0 | 82 | 1.7 | 0.53 | 0.60 | 0.47 | 0.81 | -0.03 | 0.64 | 100.0 | 8.0 | 5.0 |
sec | 2002_04 | dssp | 1l3y:A | 75.6 | 0 | 0 | 25 | 100 | 100 | 74 | 69.4 | 0 | 37 | 87 | 0.0 | 0.27 | 0.11 | 0.44 | 1.0 | 0.45 | 0.35 | 100.0 | 9.0 | 14.0 |
sec | 2002_04 | dssp | 1l8c:B | 62.7 | 42 | 50 | 0 | 0 | 75 | 70 | 55.7 | 42 | 100 | 62 | 1.9 | 0.05 | 0.06 | 0.05 | 0.17 | 1.0 | 0.22 | 100.0 | 5.0 | 1.0 |
sec | 2002_04 | dssp | 1l8m:A | 32.0 | 0 | 0 | 0 | 0 | 100 | 32 | 1.3 | 0 | 100 | 4 | 0.0 | 0.00 | 0.00 | 0.00 | 1.0 | 1.0 | 0.00 | 0.0 | 67.0 | 0.00 |
sec | 2002_04 | dssp | THIS_month:psum | 73.3 | 59 | 69 | 30 | 45 | 85 | 68 | 69.5 | 64.6 | 72.4 | 67.7 | 1.2 | 0.35 | 0.33 | 0.36 | 0.73 | 0.67 | 0.51 | 81.2 | 8.6 | 6.5 |
sec | 2002_04 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_04 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |