METHOD about: | ../../../doc/explain_methods.html#PX_about_apssp2 |
METHOD url: | APSSP2 |
TYPE : | sec |
NPROT : | 672 |
NWEEKS : | 29 |
NOTE 1 : | here ALL results obtained for APSSP2 in month 2002_04 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_04 | dssp | ALL_proteins:psum | 82.9 | 86 | 87 | 77 | 85 | 85 | 80 | 78.7 | 80.5 | 77.7 | 77.7 | 1.5 | 0.53 | 0.53 | 0.53 | 0.79 | 0.76 | 0.70 | 8601.1 | 4.6 | 4.3 |
sec | 2002_04 | dssp | ALL_proteins:sig | 11.5 | 27 | 28 | 34 | 36 | 13 | 14 | 15.0 | 21.0 | 23.6 | 17.1 | 3.5 | 0.22 | 0.22 | 0.22 | 0.22 | 0.23 | 0.20 | 8521.5 | 6.2 | 6.4 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.44 | 1 | 1 | 1 | 1 | 0.51 | 0.54 | 0.58 | 0.81 | 0.91 | 0.66 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 328.7 | 0.24 | 0.24 |
sec | 2002_04 | dssp | THIS_month:psum | 74.8 | 72 | 68 | 42 | 54 | 75 | 72 | 70.6 | 76.0 | 73.7 | 66.0 | 1.5 | 0.36 | 0.36 | 0.37 | 0.65 | 0.68 | 0.52 | 86.3 | 7.3 | 6.6 |
sec | 2002_04 | dssp | 1ich:A | 81.6 | 87 | 87 | 0 | 0 | 65 | 65 | 93.0 | 100 | 100 | 73 | 0.0 | 0.22 | 0.22 | 0.22 | 0.52 | 1.0 | 0.52 | 100.0 | 0.00 | 0.00 |
sec | 2002_04 | dssp | 1icz:A | 46.6 | 83 | 30 | 33 | 16 | 38 | 82 | 34.9 | 56 | 24 | 31 | 1.2 | 0.08 | 0.09 | 0.07 | 0.29 | 0.16 | 0.13 | 100.0 | 34.0 | 6.0 |
sec | 2002_04 | dssp | 1jki:A | 77.9 | 78 | 91 | 59 | 85 | 89 | 67 | 70.1 | 85 | 56 | 68 | 1.1 | 0.43 | 0.42 | 0.45 | 0.77 | 0.63 | 0.60 | 0.0 | 4.0 | 7.0 |
sec | 2002_04 | dssp | 1jww:A | 87.5 | 95 | 95 | 85 | 78 | 83 | 88 | 92.0 | 100 | 91 | 87 | 0.0 | 0.63 | 0.64 | 0.63 | 0.93 | 0.75 | 0.74 | 100.0 | 0.00 | 2.0 |
sec | 2002_04 | dssp | 1jyh:A | 79.4 | 83 | 88 | 69 | 91 | 87 | 67 | 84.1 | 88 | 85 | 79 | 0.6 | 0.47 | 0.47 | 0.48 | 0.81 | 0.69 | 0.61 | 100.0 | 1.0 | 9.0 |
sec | 2002_04 | dssp | 1k1v:A | 92.7 | 100 | 90 | 0 | 0 | 76 | 100 | 83.8 | 83 | 100 | 84 | 0.0 | 0.65 | 0.61 | 0.69 | 0.83 | 1.0 | 0.83 | 100.0 | 7.0 | 0.00 |
sec | 2002_04 | dssp | 1k2e:A | 73.7 | 90 | 81 | 59 | 79 | 74 | 63 | 69.2 | 77 | 60 | 69 | 3.2 | 0.39 | 0.39 | 0.39 | 0.80 | 0.53 | 0.50 | 0.0 | 3.0 | 9.0 |
sec | 2002_04 | dssp | 1k3b:A | 77.3 | 100 | 57 | 66 | 93 | 90 | 68 | 80.7 | 100 | 81 | 77 | 0.8 | 0.37 | 0.39 | 0.36 | 0.74 | 0.61 | 0.59 | 0.0 | 2.0 | 15.0 |
sec | 2002_04 | dssp | 1k3k:A | 85.6 | 95 | 84 | 0 | 0 | 69 | 90 | 84.7 | 94 | 100 | 72 | 0.0 | 0.41 | 0.40 | 0.42 | 0.70 | 1.0 | 0.69 | 100.0 | 8.0 | 0.00 |
sec | 2002_04 | dssp | 1k81:A | 75.0 | 0 | 0 | 57 | 91 | 94 | 66 | 60.4 | 100 | 68 | 54 | 0.0 | 0.25 | 0.25 | 0.27 | 1.0 | 0.55 | 0.55 | 100.0 | 0.00 | 19.0 |
sec | 2002_04 | dssp | 1k8b:A | 75.0 | 95 | 76 | 44 | 100 | 84 | 61 | 72.5 | 91 | 50 | 73 | 7.6 | 0.43 | 0.42 | 0.45 | 0.74 | 0.58 | 0.60 | 100.0 | 9.0 | 19.0 |
sec | 2002_04 | dssp | 1ksk:A | 77.8 | 84 | 81 | 67 | 77 | 80 | 76 | 73.2 | 82 | 63 | 74 | 0.0 | 0.42 | 0.42 | 0.43 | 0.78 | 0.62 | 0.55 | 100.0 | 0.00 | 3.0 |
sec | 2002_04 | dssp | 1ku3:A | 83.6 | 91 | 82 | 0 | 0 | 72 | 85 | 76.6 | 100 | 100 | 52 | 0.0 | 0.35 | 0.34 | 0.36 | 0.65 | 1.0 | 0.65 | 100.0 | 6.0 | 0.00 |
sec | 2002_04 | dssp | 1kv8:B | 84.2 | 87 | 87 | 74 | 94 | 85 | 75 | 92.0 | 96 | 88 | 88 | 2.3 | 0.51 | 0.51 | 0.52 | 0.75 | 0.80 | 0.70 | 100.0 | 0.00 | 4.0 |
sec | 2002_04 | dssp | 1kxl:A | 56.1 | 91 | 38 | 31 | 64 | 49 | 83 | 40.7 | 77 | 31 | 32 | 9.6 | 0.15 | 0.15 | 0.16 | 0.38 | 0.37 | 0.38 | 100.0 | 33.0 | 9.0 |
sec | 2002_04 | dssp | 1ky9:B | 68.6 | 30 | 75 | 61 | 100 | 95 | 55 | 65.3 | 24 | 71 | 100 | 0.0 | 0.37 | 0.33 | 0.42 | 0.40 | 0.69 | 0.48 | 100.0 | 11.0 | 15.0 |
sec | 2002_04 | dssp | 1l0o:A | 83.0 | 83 | 95 | 88 | 75 | 79 | 77 | 81.8 | 88 | 83 | 73 | 0.7 | 0.53 | 0.54 | 0.53 | 0.83 | 0.74 | 0.65 | 100.0 | 4.0 | 4.0 |
sec | 2002_04 | dssp | 1l0o:C | 84.2 | 90 | 100 | 0 | 0 | 71 | 76 | 92.1 | 100 | 0 | 75 | 3.5 | 0.57 | 0.65 | 0.49 | 0.84 | -0.04 | 0.66 | 100.0 | 7.0 | 8.0 |
sec | 2002_04 | dssp | 1l3y:A | 80.5 | 0 | 0 | 87 | 70 | 89 | 83 | 65.8 | 0 | 100 | 65 | 0.0 | 0.37 | 0.31 | 0.44 | 1.0 | 0.72 | 0.50 | 100.0 | 9.0 | 4.0 |
sec | 2002_04 | dssp | 1l7j:A | 72.2 | 46 | 63 | 65 | 82 | 82 | 67 | 65.6 | 56 | 72 | 61 | 0.0 | 0.26 | 0.26 | 0.28 | 0.50 | 0.56 | 0.45 | 100.0 | 2.0 | 9.0 |
sec | 2002_04 | dssp | 1l8c:B | 58.8 | 42 | 44 | 0 | 0 | 68 | 70 | 45.5 | 42 | 100 | 46 | 3.9 | 0.07 | 0.08 | 0.06 | 0.10 | 1.0 | 0.21 | 100.0 | 1.0 | 3.0 |
sec | 2002_04 | dssp | 1l8m:A | 46.2 | 46 | 68 | 0 | 0 | 45 | 28 | 30.3 | 35 | 100 | 20 | 0.0 | 0.05 | 0.06 | 0.04 | 0.01 | 1.0 | -0.07 | 100.0 | 21.0 | 2.0 |
sec | 2002_04 | dssp | THIS_month:psum | 74.8 | 72 | 68 | 42 | 54 | 75 | 72 | 70.6 | 76.0 | 73.7 | 66.0 | 1.5 | 0.36 | 0.36 | 0.37 | 0.65 | 0.68 | 0.52 | 86.3 | 7.3 | 6.6 |
sec | 2002_04 | dssp | ALL_proteins:psum | 82.9 | 86 | 87 | 77 | 85 | 85 | 80 | 78.7 | 80.5 | 77.7 | 77.7 | 1.5 | 0.53 | 0.53 | 0.53 | 0.79 | 0.76 | 0.70 | 8601.1 | 4.6 | 4.3 |
sec | 2002_04 | dssp | ALL_proteins:sig | 11.5 | 27 | 28 | 34 | 36 | 13 | 14 | 15.0 | 21.0 | 23.6 | 17.1 | 3.5 | 0.22 | 0.22 | 0.22 | 0.22 | 0.23 | 0.20 | 8521.5 | 6.2 | 6.4 |
sec | 2002_04 | dssp | ALL_proteins:errsig | 0.44 | 1 | 1 | 1 | 1 | 0.51 | 0.54 | 0.58 | 0.81 | 0.91 | 0.66 | 0.13 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 328.7 | 0.24 | 0.24 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |