METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_03 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_03 | dssp | THIS_month:psum | 75.1 | 71 | 69 | 58 | 64 | 76 | 71 | 71.0 | 71.8 | 73.6 | 66.1 | 3.8 | 0.36 | 0.37 | 0.35 | 0.57 | 0.61 | 0.55 | 84 | 7.0 | 7.0 |
sec | 2002_03 | dssp | 1gk7:A | 89.7 | 94 | 94 | 0 | 0 | 50 | 50 | 93.2 | 100 | 100 | 33 | 0.0 | 0.19 | 0.19 | 0.19 | 0.44 | 1.0 | 0.44 | 100.0 | 0.00 | 0.00 |
sec | 2002_03 | dssp | 1i60:A | 75.5 | 75 | 90 | 64 | 75 | 81 | 62 | 69.1 | 74 | 63 | 64 | 1.0 | 0.38 | 0.38 | 0.38 | 0.70 | 0.63 | 0.53 | 100.0 | 7.0 | 2.0 |
sec | 2002_03 | dssp | 1ib8:A | 81.7 | 100 | 66 | 84 | 90 | 69 | 88 | 84.2 | 100 | 94 | 69 | 1.8 | 0.53 | 0.54 | 0.53 | 0.75 | 0.80 | 0.66 | 0.0 | 11.0 | 2.0 |
sec | 2002_03 | dssp | 1j4w:A | 77.0 | 66 | 100 | 80 | 77 | 100 | 53 | 86.8 | 79 | 100 | 87 | 6.7 | 0.48 | 0.50 | 0.46 | 0.69 | 0.70 | 0.65 | 100.0 | 17.0 | 1.0 |
sec | 2002_03 | dssp | 1j5b:A | 97.3 | 97 | 100 | 0 | 0 | 100 | 66 | 98.6 | 100 | 100 | 75 | 0.0 | 0.65 | 0.75 | 0.56 | 0.80 | 1.0 | 0.80 | 100.0 | 2.0 | 0.00 |
sec | 2002_03 | dssp | 1j8c:A | 90.3 | 93 | 82 | 85 | 92 | 91 | 91 | 91.4 | 100 | 92 | 89 | 0.0 | 0.63 | 0.64 | 0.64 | 0.85 | 0.84 | 0.79 | 100.0 | 1.0 | 1.0 |
sec | 2002_03 | dssp | 1jjg:A | 64.7 | 100 | 22 | 75 | 64 | 56 | 94 | 45.9 | 39 | 83 | 37 | 5.8 | 0.26 | 0.30 | 0.23 | 0.41 | 0.54 | 0.50 | 100.0 | 20.0 | 4.0 |
sec | 2002_03 | dssp | 1jmk:O | 84.3 | 96 | 81 | 70 | 94 | 79 | 84 | 84.6 | 95 | 83 | 75 | 1.3 | 0.54 | 0.53 | 0.56 | 0.80 | 0.77 | 0.70 | 100.0 | 7.0 | 5.0 |
sec | 2002_03 | dssp | 1jmr:B | 86.6 | 94 | 92 | 75 | 86 | 81 | 79 | 86.8 | 97 | 89 | 73 | 0.0 | 0.59 | 0.59 | 0.60 | 0.87 | 0.76 | 0.70 | 100.0 | 1.0 | 2.0 |
sec | 2002_03 | dssp | 1jo8:A | 81.0 | 33 | 100 | 80 | 80 | 86 | 80 | 73.4 | 33 | 84 | 67 | 1.7 | 0.35 | 0.33 | 0.38 | 0.56 | 0.65 | 0.65 | 100.0 | 3.0 | 0.00 |
sec | 2002_03 | dssp | 1k11:A | 46.9 | 55 | 20 | 29 | 93 | 68 | 62 | 54.5 | 83 | 39 | 59 | 29.5 | 0.19 | 0.20 | 0.20 | 0.06 | 0.37 | 0.48 | 100.0 | 30.0 | 33.0 |
sec | 2002_03 | dssp | 1k24:A | 44.6 | 0 | 0 | 30 | 89 | 77 | 40 | 40.4 | 0 | 31 | 69 | 14.4 | 0.06 | 0.08 | 0.05 | -0.05 | 0.25 | 0.26 | 0.0 | 17.0 | 44.0 |
sec | 2002_03 | dssp | 1k8h:A | 72.9 | 74 | 52 | 73 | 82 | 72 | 80 | 77.4 | 81 | 71 | 80 | 6.0 | 0.33 | 0.34 | 0.33 | 0.50 | 0.67 | 0.57 | 100.0 | 8.0 | 3.0 |
sec | 2002_03 | dssp | 1kg0:C | 72.1 | 80 | 80 | 75 | 50 | 69 | 85 | 62.2 | 71 | 57 | 61 | 0.7 | 0.30 | 0.32 | 0.29 | 0.77 | 0.45 | 0.46 | 100.0 | 0.00 | 12.0 |
sec | 2002_03 | dssp | 1kil:E | 85.4 | 86 | 96 | 0 | 0 | 80 | 44 | 53.5 | 51 | 100 | 84 | 0.0 | 0.25 | 0.30 | 0.21 | 0.52 | 1.0 | 0.52 | 100.0 | 9.0 | 0.00 |
sec | 2002_03 | dssp | 1kj6:A | 42.2 | 20 | 9 | 15 | 28 | 59 | 59 | 32.7 | 20 | 11 | 45 | 8.8 | 0.03 | 0.04 | 0.04 | -0.03 | -0.00 | -0.01 | 100.0 | 13.0 | 13.0 |
sec | 2002_03 | dssp | 1kjk:A | 79.6 | 94 | 88 | 58 | 77 | 80 | 72 | 81.4 | 100 | 58 | 79 | 0.0 | 0.50 | 0.49 | 0.51 | 0.86 | 0.58 | 0.58 | 100.0 | 2.0 | 6.0 |
sec | 2002_03 | dssp | 1kl9:A | 70.0 | 0 | 0 | 80 | 68 | 69 | 85 | 65.3 | 0 | 90 | 57 | 8.0 | 0.26 | 0.27 | 0.26 | -0.07 | 0.52 | 0.57 | 100.0 | 2.0 | 8.0 |
sec | 2002_03 | dssp | 1kqf:B | 70.9 | 78 | 72 | 54 | 60 | 72 | 73 | 68.9 | 86 | 66 | 61 | 1.7 | 0.27 | 0.27 | 0.27 | 0.64 | 0.47 | 0.45 | 100.0 | 2.0 | 1.0 |
sec | 2002_03 | dssp | 1kqf:C | 85.2 | 90 | 94 | 42 | 27 | 73 | 68 | 82.6 | 88 | 34 | 67 | 2.3 | 0.35 | 0.38 | 0.34 | 0.69 | 0.31 | 0.63 | 0.0 | 3.0 | 1.0 |
sec | 2002_03 | dssp | 1kqr:A | 70.6 | 62 | 100 | 66 | 84 | 79 | 54 | 68.9 | 81 | 68 | 65 | 0.0 | 0.31 | 0.31 | 0.33 | 0.77 | 0.50 | 0.43 | 100.0 | 3.0 | 11.0 |
sec | 2002_03 | dssp | 1ktb:A | 80.9 | 78 | 89 | 67 | 82 | 90 | 75 | 75.7 | 75 | 76 | 75 | 1.8 | 0.45 | 0.44 | 0.46 | 0.76 | 0.67 | 0.66 | 0.0 | 4.0 | 4.0 |
sec | 2002_03 | dssp | 1kvk:A | 68.5 | 33 | 60 | 70 | 82 | 79 | 55 | 66.8 | 44 | 65 | 78 | 4.1 | 0.22 | 0.22 | 0.23 | 0.39 | 0.51 | 0.45 | 100.0 | 5.0 | 8.0 |
sec | 2002_03 | dssp | 1kvv:A | 79.8 | 96 | 73 | 91 | 57 | 68 | 95 | 59.8 | 100 | 88 | 47 | 0.0 | 0.48 | 0.52 | 0.46 | 0.76 | 0.68 | 0.63 | 100.0 | 9.0 | 6.0 |
sec | 2002_03 | dssp | 1l1c:A | 81.8 | 100 | 75 | 90 | 74 | 73 | 91 | 72.9 | 100 | 100 | 57 | 0.0 | 0.46 | 0.48 | 0.45 | 0.85 | 0.68 | 0.65 | 100.0 | 1.0 | 9.0 |
sec | 2002_03 | dssp | THIS_month:psum | 75.1 | 71 | 69 | 58 | 64 | 76 | 71 | 71.0 | 71.8 | 73.6 | 66.1 | 3.8 | 0.36 | 0.37 | 0.35 | 0.57 | 0.61 | 0.55 | 84 | 7.0 | 7.0 |
sec | 2002_03 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |