METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2002_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_03 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_03 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2002_03 | dssp | THIS_month:psum | 76.0 | 75 | 68 | 60 | 71 | 76 | 73 | 73.4 | 71.2 | 71.2 | 67.9 | 3.6 | 0.37 | 0.38 | 0.37 | 0.55 | 0.62 | 0.55 | 88.8 | 4.9 | 5.2 |
sec | 2002_03 | dssp | 1gk7:A | 87.2 | 94 | 91 | 0 | 0 | 25 | 33 | 90.6 | 100 | 100 | 8 | 0.0 | 0.05 | 0.05 | 0.06 | 0.21 | 1.0 | 0.21 | 100.0 | 2.0 | 0.00 |
sec | 2002_03 | dssp | 1i60:A | 81.3 | 83 | 90 | 68 | 92 | 85 | 68 | 76.9 | 84 | 72 | 69 | 0.0 | 0.49 | 0.48 | 0.50 | 0.76 | 0.75 | 0.62 | 100.0 | 3.0 | 4.0 |
sec | 2002_03 | dssp | 1ib8:A | 82.9 | 92 | 74 | 85 | 90 | 75 | 82 | 85.4 | 70 | 98 | 85 | 0.0 | 0.54 | 0.55 | 0.54 | 0.77 | 0.82 | 0.64 | 100.0 | 5.0 | 1.0 |
sec | 2002_03 | dssp | 1j8c:A | 87.4 | 100 | 71 | 77 | 87 | 88 | 93 | 93.7 | 100 | 89 | 94 | 1.9 | 0.57 | 0.59 | 0.56 | 0.81 | 0.76 | 0.78 | 100.0 | 5.0 | 2.0 |
sec | 2002_03 | dssp | 1jjg:A | 78.4 | 100 | 40 | 93 | 73 | 68 | 95 | 69.3 | 75 | 80 | 64 | 0.0 | 0.45 | 0.50 | 0.41 | 0.60 | 0.73 | 0.61 | 100.0 | 8.0 | 8.0 |
sec | 2002_03 | dssp | 1jmk:O | 83.0 | 92 | 83 | 65 | 88 | 82 | 80 | 86.8 | 92 | 85 | 82 | 1.7 | 0.50 | 0.49 | 0.51 | 0.79 | 0.71 | 0.68 | 100.0 | 3.0 | 5.0 |
sec | 2002_03 | dssp | 1jo8:A | 79.3 | 33 | 100 | 76 | 83 | 86 | 75 | 61.2 | 33 | 61 | 64 | 0.0 | 0.34 | 0.33 | 0.37 | 0.56 | 0.65 | 0.59 | 100.0 | 3.0 | 3.0 |
sec | 2002_03 | dssp | 1k11:A | 48.8 | 50 | 42 | 15 | 100 | 90 | 50 | 55.9 | 72 | 23 | 69 | 26.8 | 0.35 | 0.31 | 0.39 | -0.02 | 0.33 | 0.52 | 100.0 | 7.0 | 26.0 |
sec | 2002_03 | dssp | 1k8h:A | 65.4 | 66 | 45 | 60 | 69 | 68 | 77 | 67.5 | 49 | 72 | 71 | 11.2 | 0.19 | 0.20 | 0.19 | 0.40 | 0.48 | 0.52 | 100.0 | 9.0 | 4.0 |
sec | 2002_03 | dssp | 1kg0:C | 75.7 | 100 | 71 | 69 | 57 | 73 | 86 | 65.2 | 96 | 63 | 61 | 0.0 | 0.39 | 0.41 | 0.37 | 0.82 | 0.50 | 0.50 | 100.0 | 4.0 | 5.0 |
sec | 2002_03 | dssp | 1kj6:A | 62.2 | 0 | 0 | 61 | 66 | 74 | 68 | 59.6 | 0 | 64 | 66 | 2.2 | 0.17 | 0.17 | 0.18 | -0.11 | 0.50 | 0.24 | 100.0 | 2.0 | 2.0 |
sec | 2002_03 | dssp | 1kjk:A | 81.6 | 94 | 94 | 50 | 85 | 90 | 72 | 83.3 | 100 | 58 | 84 | 0.0 | 0.56 | 0.54 | 0.59 | 0.90 | 0.58 | 0.64 | 100.0 | 0.00 | 10.0 |
sec | 2002_03 | dssp | 1kl9:A | 63.7 | 45 | 77 | 88 | 56 | 72 | 60 | 55.5 | 37 | 100 | 66 | 11.9 | 0.25 | 0.26 | 0.25 | 0.38 | 0.60 | 0.47 | 0.0 | 19.0 | 12.0 |
sec | 2002_03 | dssp | 1kqf:B | 60.6 | 48 | 53 | 43 | 72 | 73 | 61 | 48.0 | 46 | 56 | 46 | 2.0 | 0.15 | 0.14 | 0.16 | 0.31 | 0.49 | 0.25 | 100.0 | 2.0 | 7.0 |
sec | 2002_03 | dssp | 1kqf:C | 82.9 | 86 | 93 | 28 | 33 | 77 | 60 | 81.4 | 88 | 32 | 62 | 1.8 | 0.30 | 0.31 | 0.29 | 0.63 | 0.28 | 0.58 | 100.0 | 5.0 | 0.00 |
sec | 2002_03 | dssp | 1ktb:A | 74.2 | 74 | 77 | 59 | 77 | 81 | 71 | 75.6 | 85 | 72 | 70 | 2.8 | 0.32 | 0.31 | 0.33 | 0.65 | 0.59 | 0.54 | 0.0 | 1.0 | 5.0 |
sec | 2002_03 | dssp | 1kvv:A | 83.7 | 96 | 75 | 58 | 58 | 81 | 96 | 72.4 | 75 | 58 | 72 | 3.8 | 0.49 | 0.51 | 0.49 | 0.78 | 0.52 | 0.76 | 100.0 | 8.0 | 0.00 |
sec | 2002_03 | dssp | 1l1c:A | 90.9 | 100 | 60 | 90 | 95 | 90 | 93 | 93.5 | 80 | 100 | 90 | 0.0 | 0.66 | 0.69 | 0.64 | 0.75 | 0.88 | 0.81 | 100.0 | 3.0 | 1.0 |
sec | 2002_03 | dssp | THIS_month:psum | 76.0 | 75 | 68 | 60 | 71 | 76 | 73 | 73.4 | 71.2 | 71.2 | 67.9 | 3.6 | 0.37 | 0.38 | 0.37 | 0.55 | 0.62 | 0.55 | 88.8 | 4.9 | 5.2 |
sec | 2002_03 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_03 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |