METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2002_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_03 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2002_03 | dssp | THIS_month:psum | 75.0 | 63 | 61 | 58 | 66 | 77 | 70 | 72.6 | 63.4 | 74.7 | 68.1 | 3.7 | 0.37 | 0.36 | 0.37 | 0.70 | 0.62 | 0.55 | 76.9 | 8.6 | 8.7 |
sec | 2002_03 | dssp | 1gk7:A | 92.3 | 94 | 97 | 0 | 0 | 75 | 60 | 98.3 | 100 | 100 | 83 | 0.0 | 0.36 | 0.39 | 0.34 | 0.62 | 1.0 | 0.62 | 100.0 | 2.0 | 0.00 |
sec | 2002_03 | dssp | 1i60:A | 80.2 | 79 | 88 | 76 | 88 | 83 | 68 | 76.2 | 79 | 82 | 68 | 0.7 | 0.45 | 0.46 | 0.46 | 0.71 | 0.78 | 0.60 | 100.0 | 5.0 | 2.0 |
sec | 2002_03 | dssp | 1ib8:A | 82.3 | 94 | 69 | 84 | 90 | 73 | 86 | 91.7 | 100 | 93 | 85 | 1.8 | 0.51 | 0.52 | 0.51 | 0.74 | 0.80 | 0.67 | 0.0 | 8.0 | 2.0 |
sec | 2002_03 | dssp | 1j4w:A | 73.0 | 56 | 100 | 85 | 81 | 100 | 46 | 81.6 | 71 | 100 | 81 | 5.4 | 0.46 | 0.48 | 0.45 | 0.61 | 0.77 | 0.58 | 0.0 | 22.0 | 1.0 |
sec | 2002_03 | dssp | 1j5b:A | 97.3 | 97 | 100 | 0 | 0 | 100 | 66 | 98.6 | 100 | 100 | 75 | 0.0 | 0.65 | 0.75 | 0.56 | 0.80 | 1.0 | 0.80 | 100.0 | 2.0 | 0.00 |
sec | 2002_03 | dssp | 1j8c:A | 85.4 | 93 | 73 | 70 | 95 | 90 | 85 | 77.5 | 100 | 81 | 72 | 0.0 | 0.55 | 0.55 | 0.56 | 0.79 | 0.76 | 0.69 | 100.0 | 3.0 | 6.0 |
sec | 2002_03 | dssp | 1jjg:A | 71.6 | 100 | 35 | 93 | 65 | 57 | 94 | 49.2 | 52 | 100 | 36 | 0.0 | 0.37 | 0.42 | 0.34 | 0.55 | 0.66 | 0.52 | 100.0 | 10.0 | 13.0 |
sec | 2002_03 | dssp | 1jmk:O | 84.3 | 95 | 85 | 63 | 93 | 84 | 80 | 84.4 | 94 | 76 | 78 | 0.8 | 0.54 | 0.53 | 0.56 | 0.83 | 0.73 | 0.69 | 100.0 | 4.0 | 6.0 |
sec | 2002_03 | dssp | 1jmr:B | 84.6 | 93 | 92 | 63 | 88 | 84 | 73 | 84.5 | 96 | 77 | 73 | 0.0 | 0.57 | 0.56 | 0.58 | 0.87 | 0.70 | 0.67 | 100.0 | 0.00 | 5.0 |
sec | 2002_03 | dssp | 1jo8:A | 74.1 | 0 | 0 | 76 | 74 | 79 | 74 | 73.4 | 0 | 75 | 79 | 1.7 | 0.21 | 0.19 | 0.23 | 1.0 | 0.54 | 0.51 | 100.0 | 5.0 | 1.0 |
sec | 2002_03 | dssp | 1k11:A | 32.7 | 61 | 17 | 20 | 71 | 34 | 52 | 34.2 | 43 | 25 | 37 | 35.7 | 0.06 | 0.06 | 0.07 | -0.03 | 0.18 | 0.21 | 100.0 | 45.0 | 34.0 |
sec | 2002_03 | dssp | 1k24:A | 38.6 | 0 | 0 | 25 | 86 | 69 | 37 | 37.7 | 0 | 28 | 62 | 17.6 | 0.03 | 0.05 | 0.03 | -0.06 | 0.19 | 0.18 | 0.0 | 22.0 | 48.0 |
sec | 2002_03 | dssp | 1k8h:A | 60.9 | 77 | 37 | 46 | 91 | 63 | 72 | 60.5 | 52 | 55 | 68 | 11.2 | 0.21 | 0.21 | 0.21 | 0.36 | 0.55 | 0.43 | 100.0 | 21.0 | 16.0 |
sec | 2002_03 | dssp | 1kg0:C | 76.5 | 93 | 77 | 81 | 56 | 71 | 90 | 67.8 | 96 | 67 | 63 | 0.0 | 0.39 | 0.42 | 0.38 | 0.83 | 0.55 | 0.54 | 100.0 | 2.0 | 11.0 |
sec | 2002_03 | dssp | 1kil:E | 90.2 | 91 | 97 | 0 | 0 | 80 | 57 | 98.0 | 100 | 100 | 84 | 0.0 | 0.35 | 0.39 | 0.32 | 0.62 | 1.0 | 0.62 | 100.0 | 4.0 | 0.00 |
sec | 2002_03 | dssp | 1kj6:A | 73.3 | 0 | 0 | 69 | 75 | 88 | 72 | 74.4 | 0 | 81 | 84 | 0.0 | 0.27 | 0.21 | 0.33 | 1.0 | 0.61 | 0.43 | 100.0 | 11.0 | 2.0 |
sec | 2002_03 | dssp | 1kjk:A | 77.6 | 94 | 100 | 25 | 75 | 95 | 65 | 66.3 | 100 | 33 | 57 | 0.0 | 0.60 | 0.54 | 0.66 | 0.95 | 0.35 | 0.60 | 100.0 | 2.0 | 16.0 |
sec | 2002_03 | dssp | 1kl9:A | 70.0 | 0 | 0 | 85 | 60 | 65 | 85 | 63.6 | 0 | 89 | 55 | 6.0 | 0.21 | 0.19 | 0.24 | 1.0 | 0.44 | 0.53 | 100.0 | 6.0 | 18.0 |
sec | 2002_03 | dssp | 1kqf:B | 70.9 | 43 | 97 | 41 | 79 | 97 | 65 | 54.0 | 55 | 49 | 54 | 1.0 | 0.31 | 0.25 | 0.37 | 0.58 | 0.51 | 0.50 | 100.0 | 16.0 | 8.0 |
sec | 2002_03 | dssp | 1kqf:C | 75.5 | 82 | 89 | 42 | 13 | 53 | 57 | 66.8 | 70 | 42 | 53 | 6.4 | 0.17 | 0.20 | 0.16 | 0.48 | 0.19 | 0.43 | 0.0 | 5.0 | 6.0 |
sec | 2002_03 | dssp | 1kqr:A | 71.9 | 62 | 100 | 74 | 79 | 70 | 57 | 76.8 | 81 | 82 | 66 | 0.6 | 0.29 | 0.29 | 0.31 | 0.77 | 0.49 | 0.42 | 100.0 | 3.0 | 3.0 |
sec | 2002_03 | dssp | 1ktb:A | 76.3 | 73 | 81 | 63 | 80 | 84 | 71 | 74.4 | 81 | 72 | 70 | 2.0 | 0.38 | 0.37 | 0.40 | 0.68 | 0.63 | 0.57 | 0.0 | 3.0 | 5.0 |
sec | 2002_03 | dssp | 1kvk:A | 69.9 | 0 | 0 | 75 | 83 | 87 | 56 | 58.8 | 0 | 65 | 66 | 4.1 | 0.22 | 0.19 | 0.26 | 1.0 | 0.56 | 0.51 | 0.0 | 12.0 | 5.0 |
sec | 2002_03 | dssp | 1kvv:A | 90.4 | 96 | 83 | 100 | 80 | 85 | 98 | 96.2 | 100 | 100 | 93 | 0.0 | 0.67 | 0.70 | 0.65 | 0.85 | 0.87 | 0.81 | 100.0 | 4.0 | 2.0 |
sec | 2002_03 | dssp | 1kzy:C | 79.3 | 74 | 86 | 80 | 66 | 81 | 80 | 77.1 | 80 | 75 | 75 | 1.2 | 0.41 | 0.41 | 0.41 | 0.72 | 0.66 | 0.61 | 100.0 | 4.0 | 3.0 |
sec | 2002_03 | dssp | 1l1c:A | 72.7 | 0 | 0 | 90 | 66 | 66 | 80 | 66.6 | 0 | 96 | 56 | 0.0 | 0.28 | 0.26 | 0.32 | 1.0 | 0.59 | 0.46 | 100.0 | 5.0 | 14.0 |
sec | 2002_03 | dssp | THIS_month:psum | 75.0 | 63 | 61 | 58 | 66 | 77 | 70 | 72.6 | 63.4 | 74.7 | 68.1 | 3.7 | 0.37 | 0.36 | 0.37 | 0.70 | 0.62 | 0.55 | 76.9 | 8.6 | 8.7 |
sec | 2002_03 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |