METHOD about: | ../../../doc/explain_methods.html#PX_about_jpred |
METHOD url: | JPred |
TYPE : | sec |
NPROT : | 1218 |
NWEEKS : | 106 |
NOTE 1 : | here ALL results obtained for JPred in month 2002_03 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_03 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
sec | 2002_03 | dssp | THIS_month:psum | 73.4 | 55 | 59 | 52 | 71 | 86 | 66 | 70.2 | 56.4 | 68.3 | 71.8 | 4.5 | 0.35 | 0.35 | 0.35 | 0.53 | 0.58 | 0.55 | 87.5 | 8.7 | 9.1 |
sec | 2002_03 | dssp | 1gk7:A | 89.7 | 91 | 96 | 0 | 0 | 75 | 50 | 68.0 | 67 | 100 | 83 | 0.0 | 0.29 | 0.33 | 0.25 | 0.55 | 1.0 | 0.55 | 100.0 | 5.0 | 0.00 |
sec | 2002_03 | dssp | 1i60:A | 78.4 | 78 | 91 | 60 | 91 | 87 | 63 | 68.6 | 74 | 55 | 68 | 0.0 | 0.45 | 0.44 | 0.47 | 0.73 | 0.70 | 0.58 | 100.0 | 6.0 | 6.0 |
sec | 2002_03 | dssp | 1ib8:A | 85.4 | 97 | 78 | 80 | 93 | 82 | 83 | 94.5 | 100 | 100 | 87 | 0.6 | 0.58 | 0.59 | 0.58 | 0.83 | 0.81 | 0.71 | 100.0 | 5.0 | 4.0 |
sec | 2002_03 | dssp | 1j4w:A | 74.3 | 64 | 100 | 76 | 84 | 100 | 46 | 82.7 | 71 | 100 | 87 | 4.0 | 0.46 | 0.48 | 0.45 | 0.67 | 0.72 | 0.58 | 100.0 | 18.0 | 2.0 |
sec | 2002_03 | dssp | 1j8c:A | 79.6 | 66 | 55 | 59 | 88 | 91 | 83 | 80.1 | 80 | 70 | 84 | 4.8 | 0.37 | 0.37 | 0.39 | 0.53 | 0.65 | 0.67 | 100.0 | 2.0 | 8.0 |
sec | 2002_03 | dssp | 1jjg:A | 79.4 | 100 | 26 | 87 | 87 | 73 | 100 | 70.8 | 39 | 87 | 67 | 3.9 | 0.52 | 0.59 | 0.46 | 0.46 | 0.81 | 0.71 | 100.0 | 16.0 | 0.00 |
sec | 2002_03 | dssp | 1jmk:O | 83.5 | 85 | 91 | 63 | 96 | 91 | 74 | 80.8 | 88 | 78 | 74 | 0.0 | 0.54 | 0.53 | 0.56 | 0.81 | 0.74 | 0.68 | 100.0 | 2.0 | 6.0 |
sec | 2002_03 | dssp | 1jmr:B | 85.0 | 92 | 95 | 59 | 90 | 90 | 72 | 82.5 | 90 | 77 | 74 | 0.0 | 0.58 | 0.57 | 0.60 | 0.88 | 0.68 | 0.69 | 100.0 | 1.0 | 6.0 |
sec | 2002_03 | dssp | 1jo8:A | 79.3 | 0 | 0 | 65 | 94 | 100 | 72 | 62.8 | 0 | 76 | 56 | 1.7 | 0.41 | 0.34 | 0.48 | 1.0 | 0.66 | 0.67 | 100.0 | 5.0 | 13.0 |
sec | 2002_03 | dssp | 1k11:A | 46.9 | 61 | 22 | 31 | 100 | 62 | 57 | 58.2 | 88 | 41 | 65 | 25.5 | 0.17 | 0.17 | 0.17 | 0.11 | 0.43 | 0.38 | 100.0 | 30.0 | 33.0 |
sec | 2002_03 | dssp | 1k24:A | 40.6 | 0 | 0 | 25 | 86 | 77 | 35 | 33.0 | 0 | 24 | 55 | 10.4 | 0.03 | 0.04 | 0.03 | -0.04 | 0.18 | 0.16 | 0.0 | 13.0 | 48.0 |
sec | 2002_03 | dssp | 1kg0:C | 76.5 | 86 | 76 | 60 | 60 | 80 | 82 | 64.2 | 96 | 56 | 61 | 0.0 | 0.34 | 0.35 | 0.34 | 0.78 | 0.47 | 0.48 | 100.0 | 1.0 | 0.00 |
sec | 2002_03 | dssp | 1kil:E | 85.4 | 83 | 100 | 0 | 0 | 100 | 45 | 96.1 | 100 | 100 | 68 | 0.0 | 0.41 | 0.50 | 0.32 | 0.61 | 1.0 | 0.61 | 100.0 | 14.0 | 0.00 |
sec | 2002_03 | dssp | 1kj6:A | 64.4 | 0 | 0 | 30 | 50 | 92 | 67 | 54.6 | 0 | 26 | 78 | 4.4 | 0.09 | 0.06 | 0.12 | 1.0 | 0.21 | 0.33 | 100.0 | 11.0 | 11.0 |
sec | 2002_03 | dssp | 1kjk:A | 81.6 | 94 | 100 | 41 | 83 | 95 | 70 | 82.2 | 100 | 58 | 81 | 0.0 | 0.61 | 0.58 | 0.66 | 0.95 | 0.51 | 0.66 | 100.0 | 2.0 | 12.0 |
sec | 2002_03 | dssp | 1kl9:A | 72.0 | 0 | 0 | 80 | 77 | 73 | 82 | 67.5 | 0 | 91 | 60 | 6.0 | 0.39 | 0.41 | 0.38 | -0.08 | 0.63 | 0.56 | 100.0 | 4.0 | 2.0 |
sec | 2002_03 | dssp | 1kqf:B | 63.0 | 20 | 70 | 43 | 51 | 94 | 64 | 56.1 | 27 | 55 | 72 | 7.6 | 0.15 | 0.13 | 0.19 | 0.27 | 0.35 | 0.46 | 100.0 | 21.0 | 2.0 |
sec | 2002_03 | dssp | 1kqf:C | 66.2 | 64 | 93 | 57 | 12 | 75 | 46 | 69.8 | 74 | 68 | 52 | 10.6 | 0.16 | 0.20 | 0.13 | 0.43 | 0.22 | 0.45 | 0.0 | 24.0 | 11.0 |
sec | 2002_03 | dssp | 1kqr:A | 72.5 | 43 | 100 | 66 | 92 | 90 | 55 | 75.2 | 62 | 78 | 73 | 0.0 | 0.34 | 0.33 | 0.36 | 0.64 | 0.60 | 0.51 | 100.0 | 5.0 | 15.0 |
sec | 2002_03 | dssp | 1ktb:A | 73.5 | 56 | 94 | 58 | 81 | 93 | 65 | 70.6 | 67 | 71 | 72 | 1.2 | 0.36 | 0.33 | 0.39 | 0.64 | 0.61 | 0.55 | 0.0 | 12.0 | 6.0 |
sec | 2002_03 | dssp | 1kvk:A | 53.4 | 0 | 0 | 47 | 79 | 83 | 48 | 51.3 | 0 | 50 | 72 | 12.3 | 0.12 | 0.12 | 0.12 | -0.13 | 0.34 | 0.38 | 100.0 | 1.0 | 21.0 |
sec | 2002_03 | dssp | 1kvv:A | 81.7 | 87 | 72 | 66 | 61 | 81 | 92 | 71.6 | 68 | 61 | 74 | 3.8 | 0.45 | 0.47 | 0.44 | 0.70 | 0.59 | 0.71 | 100.0 | 5.0 | 0.00 |
sec | 2002_03 | dssp | 1kzy:C | 69.4 | 56 | 71 | 46 | 59 | 85 | 70 | 63.2 | 63 | 47 | 68 | 4.7 | 0.20 | 0.19 | 0.21 | 0.49 | 0.43 | 0.48 | 100.0 | 6.0 | 3.0 |
sec | 2002_03 | dssp | 1l1c:A | 80.0 | 0 | 0 | 68 | 93 | 96 | 82 | 80.4 | 0 | 72 | 94 | 7.2 | 0.49 | 0.49 | 0.50 | -0.06 | 0.70 | 0.75 | 100.0 | 1.0 | 10.0 |
sec | 2002_03 | dssp | THIS_month:psum | 73.4 | 55 | 59 | 52 | 71 | 86 | 66 | 70.2 | 56.4 | 68.3 | 71.8 | 4.5 | 0.35 | 0.35 | 0.35 | 0.53 | 0.58 | 0.55 | 87.5 | 8.7 | 9.1 |
sec | 2002_03 | dssp | ALL_proteins:psum | 73.8 | 71 | 85 | 59 | 74 | 84 | 67 | 69.2 | 65.7 | 66.3 | 68.3 | 2.5 | 0.34 | 0.33 | 0.35 | 0.67 | 0.58 | 0.54 | 7980.3 | 8.3 | 6.8 |
sec | 2002_03 | dssp | ALL_proteins:sig | 9.6 | 31 | 35 | 30 | 36 | 11 | 12 | 15.0 | 29.3 | 26.4 | 14.8 | 4.0 | 0.13 | 0.14 | 0.14 | 0.23 | 0.25 | 0.16 | 7903.8 | 8.2 | 7.2 |
sec | 2002_03 | dssp | ALL_proteins:errsig | 0.27 | 0.91 | 1 | 0.86 | 1 | 0.32 | 0.35 | 0.43 | 0.84 | 0.75 | 0.42 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 226.4 | 0.23 | 0.20 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |