METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2002_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_02 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2002_02 | dssp | THIS_month:psum | 71.4 | 62 | 61 | 45 | 49 | 73 | 71 | 66.2 | 67.5 | 72.4 | 63.5 | 3.2 | 0.29 | 0.29 | 0.29 | 0.59 | 0.61 | 0.46 | 86.2 | 6.0 | 6.3 |
sec | 2002_02 | dssp | 1eq1:A | 80.1 | 96 | 80 | 0 | 0 | 34 | 78 | 64.3 | 69 | 100 | 48 | 0.0 | 0.18 | 0.14 | 0.22 | 0.42 | 1.0 | 0.42 | 100.0 | 15.0 | 0.00 |
sec | 2002_02 | dssp | 1g9p:A | 66.7 | 0 | 0 | 11 | 20 | 87 | 72 | 30.2 | 0 | 3 | 37 | 0.0 | 0.01 | 0.01 | 0.02 | 1.0 | 0.00 | -0.05 | 100.0 | 6.0 | 8.0 |
sec | 2002_02 | dssp | 1h67:A | 84.3 | 88 | 87 | 0 | 0 | 76 | 78 | 94.1 | 97 | 100 | 88 | 0.0 | 0.34 | 0.34 | 0.34 | 0.65 | 1.0 | 0.65 | 100.0 | 0.00 | 0.00 |
sec | 2002_02 | dssp | 1i2v:A | 47.7 | 0 | 0 | 41 | 29 | 64 | 59 | 34.1 | 0 | 29 | 46 | 6.8 | 0.00 | 0.00 | 0.00 | 1.0 | 0.03 | 0.06 | 100.0 | 15.0 | 11.0 |
sec | 2002_02 | dssp | 1igq:D | 66.1 | 66 | 18 | 64 | 83 | 68 | 70 | 78.3 | 100 | 77 | 77 | 8.4 | 0.19 | 0.21 | 0.17 | 0.28 | 0.51 | 0.47 | 100.0 | 13.0 | 11.0 |
sec | 2002_02 | dssp | 1itp:A | 48.1 | 43 | 55 | 23 | 40 | 75 | 47 | 50.5 | 60 | 26 | 60 | 12.9 | 0.06 | 0.06 | 0.07 | 0.30 | 0.06 | 0.27 | 100.0 | 6.0 | 14.0 |
sec | 2002_02 | dssp | 1j7x:A | 82.8 | 85 | 86 | 77 | 87 | 83 | 78 | 77.3 | 82 | 83 | 70 | 0.0 | 0.50 | 0.50 | 0.51 | 0.77 | 0.77 | 0.65 | 100.0 | 0.00 | 2.0 |
sec | 2002_02 | dssp | 1jdq:A | 86.7 | 86 | 79 | 100 | 81 | 81 | 93 | 79.4 | 100 | 97 | 68 | 0.0 | 0.61 | 0.63 | 0.60 | 0.77 | 0.87 | 0.74 | 100.0 | 2.0 | 5.0 |
sec | 2002_02 | dssp | 1jeo:A | 90.4 | 95 | 91 | 91 | 88 | 81 | 88 | 93.0 | 100 | 91 | 82 | 0.0 | 0.65 | 0.65 | 0.66 | 0.86 | 0.88 | 0.78 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1jkz:A | 39.1 | 9 | 11 | 25 | 66 | 68 | 41 | 33.6 | 9 | 37 | 39 | 8.6 | 0.07 | 0.07 | 0.09 | -0.14 | 0.25 | 0.01 | 100.0 | 4.0 | 21.0 |
sec | 2002_02 | dssp | 1jmu:B | 63.4 | 75 | 78 | 41 | 35 | 60 | 62 | 51.1 | 60 | 44 | 46 | 4.2 | 0.25 | 0.26 | 0.25 | 0.61 | 0.24 | 0.33 | 100.0 | 1.0 | 2.0 |
sec | 2002_02 | dssp | 1jnr:B | 67.1 | 55 | 44 | 62 | 56 | 71 | 78 | 56.9 | 47 | 68 | 55 | 2.6 | 0.19 | 0.20 | 0.18 | 0.40 | 0.46 | 0.37 | 100.0 | 3.0 | 2.0 |
sec | 2002_02 | dssp | 1jrm:A | 59.6 | 51 | 59 | 63 | 45 | 62 | 69 | 48.5 | 66 | 78 | 36 | 8.6 | 0.12 | 0.12 | 0.12 | 0.38 | 0.38 | 0.36 | 100.0 | 3.0 | 8.0 |
sec | 2002_02 | dssp | 1jsb:A | 54.3 | 50 | 66 | 72 | 42 | 45 | 69 | 54.2 | 75 | 61 | 45 | 2.8 | 0.13 | 0.13 | 0.14 | 0.53 | 0.25 | 0.18 | 100.0 | 2.0 | 22.0 |
sec | 2002_02 | dssp | 1jw2:A | 93.1 | 97 | 92 | 0 | 0 | 83 | 95 | 88.9 | 100 | 100 | 72 | 0.0 | 0.62 | 0.61 | 0.64 | 0.84 | 1.0 | 0.84 | 100.0 | 4.0 | 0.00 |
sec | 2002_02 | dssp | 1jw3:A | 79.3 | 93 | 90 | 85 | 70 | 67 | 82 | 88.6 | 100 | 92 | 79 | 0.0 | 0.50 | 0.51 | 0.51 | 0.90 | 0.64 | 0.57 | 100.0 | 0.00 | 7.0 |
sec | 2002_02 | dssp | 1jy1:A | 68.9 | 55 | 60 | 64 | 88 | 79 | 66 | 63.0 | 59 | 66 | 63 | 3.1 | 0.28 | 0.27 | 0.29 | 0.41 | 0.69 | 0.45 | 100.0 | 2.0 | 6.0 |
sec | 2002_02 | dssp | 1jyg:A | 52.2 | 27 | 100 | 0 | 0 | 96 | 53 | 31.3 | 17 | 100 | 82 | 15.9 | 0.20 | 0.23 | 0.17 | 0.34 | 1.0 | 0.48 | 0.0 | 46.0 | 17.0 |
sec | 2002_02 | dssp | 1k0s:A | 75.5 | 64 | 47 | 76 | 84 | 77 | 76 | 85.9 | 69 | 88 | 86 | 1.3 | 0.32 | 0.33 | 0.31 | 0.49 | 0.67 | 0.53 | 100.0 | 3.0 | 3.0 |
sec | 2002_02 | dssp | 1k1f:A | 85.1 | 87 | 91 | 0 | 0 | 78 | 71 | 81.1 | 97 | 100 | 55 | 0.0 | 0.33 | 0.34 | 0.33 | 0.64 | 1.0 | 0.64 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1k28:D | 66.8 | 83 | 49 | 48 | 80 | 74 | 73 | 61.4 | 71 | 48 | 67 | 9.2 | 0.23 | 0.24 | 0.23 | 0.52 | 0.48 | 0.51 | 0.0 | 13.0 | 14.0 |
sec | 2002_02 | dssp | 1k6w:A | 80.9 | 81 | 89 | 69 | 82 | 86 | 74 | 78.5 | 79 | 79 | 77 | 1.1 | 0.45 | 0.45 | 0.46 | 0.77 | 0.69 | 0.64 | 0.0 | 3.0 | 3.0 |
sec | 2002_02 | dssp | 1kbh:A | 83.0 | 79 | 92 | 0 | 0 | 88 | 72 | 86.1 | 86 | 100 | 85 | 0.0 | 0.35 | 0.36 | 0.35 | 0.66 | 1.0 | 0.66 | 100.0 | 8.0 | 0.00 |
sec | 2002_02 | dssp | 1khc:A | 71.9 | 75 | 76 | 62 | 85 | 73 | 64 | 66.6 | 67 | 72 | 63 | 0.0 | 0.34 | 0.34 | 0.36 | 0.60 | 0.67 | 0.43 | 100.0 | 0.00 | 5.0 |
sec | 2002_02 | dssp | 1kps:B | 75.6 | 83 | 79 | 0 | 0 | 62 | 81 | 64.1 | 84 | 100 | 41 | 5.1 | 0.23 | 0.26 | 0.22 | 0.48 | 1.0 | 0.57 | 0.0 | 3.0 | 5.0 |
sec | 2002_02 | dssp | 1kq4:C | 81.8 | 100 | 81 | 76 | 90 | 72 | 72 | 93.2 | 100 | 100 | 79 | 0.0 | 0.57 | 0.58 | 0.57 | 0.86 | 0.74 | 0.59 | 100.0 | 6.0 | 6.0 |
sec | 2002_02 | dssp | 1kqi:A | 63.2 | 0 | 0 | 30 | 42 | 75 | 77 | 45.0 | 100 | 17 | 55 | 2.6 | 0.02 | 0.03 | 0.02 | 1.0 | 0.17 | 0.14 | 100.0 | 10.0 | 7.0 |
sec | 2002_02 | dssp | 1ktz:B | 78.3 | 0 | 0 | 77 | 82 | 83 | 76 | 75.3 | 0 | 81 | 74 | 0.0 | 0.29 | 0.28 | 0.31 | -0.01 | 0.63 | 0.56 | 100.0 | 1.0 | 2.0 |
sec | 2002_02 | dssp | 1kwh:A | 78.7 | 82 | 90 | 55 | 72 | 82 | 70 | 65.4 | 64 | 64 | 67 | 0.2 | 0.41 | 0.41 | 0.43 | 0.75 | 0.58 | 0.57 | 100.0 | 3.0 | 3.0 |
sec | 2002_02 | dssp | THIS_month:psum | 71.4 | 62 | 61 | 45 | 49 | 73 | 71 | 66.2 | 67.5 | 72.4 | 63.5 | 3.2 | 0.29 | 0.29 | 0.29 | 0.59 | 0.61 | 0.46 | 86.2 | 6.0 | 6.3 |
sec | 2002_02 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |