METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2002_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_02 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_02 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2002_02 | dssp | THIS_month:psum | 72.0 | 60 | 57 | 42 | 53 | 74 | 73 | 66.1 | 64.9 | 68.4 | 64.0 | 3.0 | 0.29 | 0.29 | 0.29 | 0.55 | 0.60 | 0.47 | 95.2 | 6.5 | 7.4 |
sec | 2002_02 | dssp | 1g9p:A | 68.9 | 0 | 0 | 22 | 50 | 87 | 74 | 44.1 | 0 | 14 | 52 | 0.0 | 0.06 | 0.05 | 0.08 | -0.05 | 0.23 | 0.05 | 100.0 | 2.0 | 11.0 |
sec | 2002_02 | dssp | 1h67:A | 88.0 | 95 | 86 | 0 | 0 | 74 | 90 | 82.4 | 86 | 100 | 76 | 0.0 | 0.45 | 0.44 | 0.47 | 0.73 | 1.0 | 0.73 | 100.0 | 6.0 | 0.00 |
sec | 2002_02 | dssp | 1i2v:A | 52.3 | 0 | 0 | 41 | 33 | 72 | 62 | 34.4 | 0 | 34 | 44 | 6.8 | 0.01 | 0.01 | 0.02 | 1.0 | 0.09 | 0.14 | 100.0 | 15.0 | 6.0 |
sec | 2002_02 | dssp | 1igq:D | 64.4 | 0 | 0 | 61 | 90 | 76 | 65 | 73.3 | 0 | 74 | 81 | 8.4 | 0.23 | 0.25 | 0.21 | -0.09 | 0.56 | 0.46 | 100.0 | 10.0 | 16.0 |
sec | 2002_02 | dssp | 1itp:A | 59.7 | 91 | 67 | 23 | 54 | 67 | 54 | 56.2 | 100 | 26 | 50 | 7.7 | 0.25 | 0.24 | 0.26 | 0.67 | 0.17 | 0.34 | 100.0 | 10.0 | 19.0 |
sec | 2002_02 | dssp | 1jeo:A | 87.0 | 87 | 93 | 91 | 88 | 84 | 78 | 81.3 | 81 | 91 | 76 | 0.0 | 0.58 | 0.59 | 0.58 | 0.79 | 0.88 | 0.71 | 100.0 | 3.0 | 0.00 |
sec | 2002_02 | dssp | 1jkz:A | 65.2 | 54 | 100 | 43 | 77 | 89 | 54 | 60.3 | 81 | 40 | 64 | 0.0 | 0.32 | 0.29 | 0.36 | 0.69 | 0.44 | 0.39 | 100.0 | 10.0 | 15.0 |
sec | 2002_02 | dssp | 1jnr:B | 59.7 | 25 | 13 | 31 | 64 | 77 | 76 | 56.9 | 15 | 35 | 71 | 10.7 | 0.11 | 0.11 | 0.11 | 0.00 | 0.34 | 0.36 | 100.0 | 10.0 | 12.0 |
sec | 2002_02 | dssp | 1jrm:A | 77.9 | 77 | 92 | 81 | 64 | 76 | 78 | 61.7 | 90 | 100 | 45 | 0.0 | 0.45 | 0.46 | 0.45 | 0.78 | 0.64 | 0.55 | 100.0 | 4.0 | 5.0 |
sec | 2002_02 | dssp | 1jsb:A | 70.0 | 100 | 100 | 81 | 51 | 57 | 85 | 72.5 | 100 | 75 | 65 | 0.0 | 0.44 | 0.45 | 0.44 | 1.0 | 0.43 | 0.44 | 100.0 | 0.00 | 18.0 |
sec | 2002_02 | dssp | 1jw2:A | 84.7 | 95 | 85 | 0 | 0 | 62 | 93 | 90.3 | 100 | 100 | 70 | 1.3 | 0.38 | 0.39 | 0.39 | 0.68 | 1.0 | 0.68 | 100.0 | 8.0 | 2.0 |
sec | 2002_02 | dssp | 1jw3:A | 81.4 | 93 | 71 | 87 | 87 | 70 | 84 | 81.2 | 100 | 93 | 66 | 0.0 | 0.52 | 0.53 | 0.52 | 0.75 | 0.80 | 0.62 | 100.0 | 7.0 | 0.00 |
sec | 2002_02 | dssp | 1jy1:A | 71.1 | 69 | 65 | 59 | 88 | 78 | 69 | 62.3 | 66 | 65 | 58 | 3.7 | 0.29 | 0.28 | 0.30 | 0.51 | 0.66 | 0.50 | 0.0 | 1.0 | 7.0 |
sec | 2002_02 | dssp | 1jyg:A | 75.4 | 86 | 77 | 0 | 0 | 56 | 77 | 57.8 | 63 | 100 | 47 | 2.8 | 0.20 | 0.21 | 0.20 | 0.44 | 1.0 | 0.51 | 100.0 | 7.0 | 2.0 |
sec | 2002_02 | dssp | 1k0s:A | 76.8 | 100 | 43 | 74 | 85 | 74 | 85 | 87.6 | 100 | 83 | 88 | 4.6 | 0.38 | 0.41 | 0.36 | 0.61 | 0.67 | 0.63 | 100.0 | 11.0 | 5.0 |
sec | 2002_02 | dssp | 1k1f:A | 85.1 | 85 | 93 | 0 | 0 | 84 | 80 | 62.5 | 63 | 100 | 59 | 4.4 | 0.42 | 0.47 | 0.36 | 0.66 | 1.0 | 0.74 | 100.0 | 5.0 | 4.0 |
sec | 2002_02 | dssp | 1k28:D | 65.4 | 67 | 46 | 48 | 72 | 76 | 71 | 63.7 | 62 | 52 | 72 | 8.2 | 0.18 | 0.19 | 0.19 | 0.44 | 0.44 | 0.47 | 100.0 | 7.0 | 11.0 |
sec | 2002_02 | dssp | 1kbh:A | 72.3 | 75 | 78 | 0 | 0 | 66 | 63 | 74.4 | 84 | 100 | 59 | 0.0 | 0.13 | 0.14 | 0.13 | 0.42 | 1.0 | 0.42 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1khc:A | 76.3 | 67 | 89 | 62 | 94 | 91 | 65 | 75.1 | 72 | 74 | 78 | 0.0 | 0.42 | 0.40 | 0.45 | 0.67 | 0.72 | 0.56 | 100.0 | 9.0 | 6.0 |
sec | 2002_02 | dssp | 1kqi:A | 57.9 | 0 | 0 | 30 | 33 | 67 | 76 | 42.6 | 100 | 13 | 53 | 2.6 | 0.00 | 0.01 | 0.00 | 1.0 | 0.08 | 0.07 | 100.0 | 10.0 | 2.0 |
sec | 2002_02 | dssp | 1ktz:B | 72.6 | 0 | 0 | 58 | 87 | 89 | 71 | 69.2 | 0 | 69 | 72 | 2.8 | 0.23 | 0.23 | 0.23 | -0.03 | 0.55 | 0.52 | 100.0 | 1.0 | 15.0 |
sec | 2002_02 | dssp | THIS_month:psum | 72.0 | 60 | 57 | 42 | 53 | 74 | 73 | 66.1 | 64.9 | 68.4 | 64.0 | 3.0 | 0.29 | 0.29 | 0.29 | 0.55 | 0.60 | 0.47 | 95.2 | 6.5 | 7.4 |
sec | 2002_02 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_02 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |