METHOD about: | ../../../doc/explain_methods.html#PX_about_phdpsi |
METHOD url: | PHDpsi |
TYPE : | sec |
NPROT : | 1598 |
NWEEKS : | 109 |
NOTE 1 : | here ALL results obtained for PHDpsi in month 2002_02 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_02 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
sec | 2002_02 | dssp | THIS_month:psum | 72.6 | 61 | 67 | 45 | 53 | 75 | 71 | 67.2 | 67.9 | 73.0 | 64.5 | 2.5 | 0.31 | 0.30 | 0.31 | 0.65 | 0.63 | 0.49 | 86.2 | 7.1 | 7 |
sec | 2002_02 | dssp | 1eq1:A | 80.7 | 97 | 80 | 0 | 0 | 34 | 83 | 40.1 | 37 | 100 | 47 | 0.0 | 0.20 | 0.15 | 0.26 | 0.44 | 1.0 | 0.44 | 100.0 | 15.0 | 0.00 |
sec | 2002_02 | dssp | 1g9p:A | 60.0 | 0 | 0 | 55 | 31 | 66 | 75 | 33.5 | 0 | 29 | 36 | 0.0 | 0.06 | 0.06 | 0.07 | 1.0 | 0.20 | 0.07 | 100.0 | 6.0 | 15.0 |
sec | 2002_02 | dssp | 1h67:A | 77.8 | 79 | 85 | 0 | 0 | 74 | 67 | 74.4 | 76 | 100 | 70 | 0.0 | 0.23 | 0.25 | 0.23 | 0.55 | 1.0 | 0.53 | 100.0 | 4.0 | 0.00 |
sec | 2002_02 | dssp | 1i2v:A | 77.3 | 85 | 100 | 75 | 60 | 76 | 82 | 77.0 | 100 | 69 | 74 | 0.0 | 0.45 | 0.46 | 0.46 | 0.91 | 0.52 | 0.54 | 100.0 | 2.0 | 6.0 |
sec | 2002_02 | dssp | 1igq:D | 59.3 | 0 | 0 | 48 | 100 | 80 | 66 | 70.7 | 0 | 61 | 90 | 15.2 | 0.29 | 0.32 | 0.26 | -0.12 | 0.55 | 0.50 | 100.0 | 18.0 | 27.0 |
sec | 2002_02 | dssp | 1itp:A | 64.9 | 91 | 77 | 34 | 60 | 71 | 57 | 65.5 | 100 | 38 | 62 | 5.1 | 0.32 | 0.31 | 0.33 | 0.76 | 0.27 | 0.39 | 100.0 | 5.0 | 14.0 |
sec | 2002_02 | dssp | 1j7x:A | 78.1 | 79 | 84 | 75 | 77 | 78 | 73 | 72.3 | 77 | 76 | 66 | 0.3 | 0.42 | 0.42 | 0.42 | 0.71 | 0.70 | 0.56 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1jdq:A | 82.7 | 72 | 94 | 77 | 77 | 88 | 81 | 75.9 | 90 | 81 | 70 | 0.0 | 0.48 | 0.47 | 0.50 | 0.78 | 0.70 | 0.64 | 100.0 | 5.0 | 0.00 |
sec | 2002_02 | dssp | 1jeo:A | 88.7 | 94 | 93 | 91 | 75 | 77 | 86 | 86.3 | 90 | 87 | 79 | 0.0 | 0.62 | 0.63 | 0.62 | 0.87 | 0.80 | 0.74 | 100.0 | 0.00 | 2.0 |
sec | 2002_02 | dssp | 1jkz:A | 65.2 | 45 | 100 | 37 | 100 | 100 | 54 | 66.2 | 63 | 50 | 81 | 0.0 | 0.37 | 0.30 | 0.45 | 0.62 | 0.53 | 0.47 | 100.0 | 13.0 | 21.0 |
sec | 2002_02 | dssp | 1jmu:B | 67.6 | 75 | 81 | 41 | 41 | 70 | 65 | 54.8 | 64 | 47 | 50 | 4.2 | 0.28 | 0.28 | 0.29 | 0.64 | 0.29 | 0.42 | 100.0 | 2.0 | 0.00 |
sec | 2002_02 | dssp | 1jnr:B | 75.8 | 0 | 0 | 68 | 75 | 94 | 76 | 60.1 | 0 | 83 | 63 | 2.0 | 0.28 | 0.21 | 0.36 | 1.0 | 0.63 | 0.51 | 100.0 | 13.0 | 2.0 |
sec | 2002_02 | dssp | 1jrm:A | 72.1 | 77 | 92 | 72 | 53 | 68 | 72 | 54.1 | 90 | 81 | 37 | 0.0 | 0.39 | 0.40 | 0.39 | 0.78 | 0.50 | 0.44 | 100.0 | 4.0 | 7.0 |
sec | 2002_02 | dssp | 1jsb:A | 52.9 | 50 | 100 | 72 | 37 | 42 | 73 | 52.1 | 75 | 62 | 42 | 5.7 | 0.20 | 0.19 | 0.21 | 0.68 | 0.15 | 0.23 | 100.0 | 5.0 | 30.0 |
sec | 2002_02 | dssp | 1jw2:A | 83.3 | 91 | 84 | 0 | 0 | 66 | 80 | 90.6 | 100 | 100 | 71 | 0.0 | 0.30 | 0.29 | 0.32 | 0.61 | 1.0 | 0.61 | 100.0 | 5.0 | 0.00 |
sec | 2002_02 | dssp | 1jw3:A | 67.9 | 93 | 61 | 70 | 67 | 52 | 76 | 74.4 | 92 | 75 | 63 | 4.2 | 0.30 | 0.30 | 0.30 | 0.67 | 0.52 | 0.43 | 0.0 | 12.0 | 1.0 |
sec | 2002_02 | dssp | 1jy1:A | 65.8 | 63 | 55 | 59 | 78 | 70 | 67 | 60.6 | 58 | 61 | 61 | 4.9 | 0.22 | 0.22 | 0.23 | 0.41 | 0.60 | 0.41 | 100.0 | 3.0 | 6.0 |
sec | 2002_02 | dssp | 1jyg:A | 63.8 | 52 | 85 | 0 | 0 | 84 | 52 | 53.8 | 48 | 100 | 64 | 2.8 | 0.12 | 0.14 | 0.11 | 0.35 | 1.0 | 0.39 | 0.0 | 24.0 | 2.0 |
sec | 2002_02 | dssp | 1k0s:A | 74.2 | 71 | 38 | 69 | 81 | 78 | 81 | 84.6 | 94 | 77 | 89 | 6.6 | 0.30 | 0.32 | 0.29 | 0.45 | 0.60 | 0.61 | 100.0 | 7.0 | 5.0 |
sec | 2002_02 | dssp | 1k1f:A | 89.6 | 89 | 100 | 0 | 0 | 89 | 77 | 86.8 | 100 | 100 | 67 | 0.0 | 0.63 | 0.70 | 0.56 | 0.84 | 1.0 | 0.75 | 100.0 | 7.0 | 2.0 |
sec | 2002_02 | dssp | 1k28:D | 68.7 | 64 | 58 | 68 | 68 | 70 | 73 | 65.6 | 60 | 78 | 58 | 6.4 | 0.22 | 0.23 | 0.22 | 0.51 | 0.51 | 0.49 | 100.0 | 1.0 | 0.00 |
sec | 2002_02 | dssp | 1k6w:A | 73.0 | 67 | 81 | 61 | 79 | 84 | 66 | 73.8 | 72 | 73 | 75 | 3.0 | 0.31 | 0.30 | 0.32 | 0.60 | 0.62 | 0.54 | 0.0 | 6.0 | 5.0 |
sec | 2002_02 | dssp | 1kbh:A | 78.7 | 79 | 85 | 0 | 0 | 77 | 70 | 86.1 | 89 | 100 | 80 | 0.0 | 0.24 | 0.25 | 0.24 | 0.56 | 1.0 | 0.56 | 100.0 | 4.0 | 0.00 |
sec | 2002_02 | dssp | 1khc:A | 60.7 | 40 | 67 | 37 | 90 | 91 | 54 | 50.3 | 43 | 40 | 61 | 4.4 | 0.20 | 0.17 | 0.23 | 0.32 | 0.52 | 0.40 | 100.0 | 15.0 | 11.0 |
sec | 2002_02 | dssp | 1kps:B | 75.6 | 72 | 86 | 0 | 0 | 81 | 78 | 73.4 | 74 | 100 | 71 | 8.9 | 0.32 | 0.38 | 0.27 | 0.51 | 1.0 | 0.67 | 0.0 | 10.0 | 8.0 |
sec | 2002_02 | dssp | 1kq4:C | 78.8 | 100 | 81 | 69 | 90 | 72 | 66 | 91.7 | 100 | 100 | 75 | 0.0 | 0.54 | 0.55 | 0.55 | 0.86 | 0.68 | 0.53 | 100.0 | 6.0 | 9.0 |
sec | 2002_02 | dssp | 1kqi:A | 78.9 | 0 | 0 | 30 | 75 | 96 | 79 | 41.9 | 100 | 30 | 46 | 0.0 | 0.14 | 0.11 | 0.18 | 1.0 | 0.37 | 0.37 | 100.0 | 0.00 | 15.0 |
sec | 2002_02 | dssp | 1ktz:B | 72.6 | 0 | 0 | 62 | 78 | 85 | 69 | 71.7 | 0 | 75 | 72 | 0.0 | 0.19 | 0.17 | 0.21 | 1.0 | 0.50 | 0.46 | 100.0 | 2.0 | 9.0 |
sec | 2002_02 | dssp | 1kwh:A | 72.6 | 69 | 91 | 40 | 72 | 87 | 61 | 62.5 | 79 | 46 | 51 | 0.4 | 0.33 | 0.31 | 0.35 | 0.66 | 0.48 | 0.50 | 100.0 | 10.0 | 6.0 |
sec | 2002_02 | dssp | THIS_month:psum | 72.6 | 61 | 67 | 45 | 53 | 75 | 71 | 67.2 | 67.9 | 73.0 | 64.5 | 2.5 | 0.31 | 0.30 | 0.31 | 0.65 | 0.63 | 0.49 | 86.2 | 7.1 | 7 |
sec | 2002_02 | dssp | ALL_proteins:psum | 74.4 | 77 | 81 | 63 | 71 | 77 | 70 | 69.9 | 69.3 | 68.0 | 66.0 | 2.6 | 0.33 | 0.33 | 0.34 | 0.67 | 0.59 | 0.53 | 7997.5 | 6.8 | 5.6 |
sec | 2002_02 | dssp | ALL_proteins:sig | 9.7 | 32 | 32 | 31 | 35 | 13 | 12 | 13.8 | 28.0 | 26.1 | 14.7 | 4.3 | 0.24 | 0.27 | 0.22 | 0.22 | 0.25 | 0.15 | 7920.1 | 8.3 | 6.7 |
sec | 2002_02 | dssp | ALL_proteins:errsig | 0.24 | 0.80 | 0.81 | 0.79 | 0.88 | 0.34 | 0.30 | 0.34 | 0.70 | 0.65 | 0.37 | 0.11 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 198.1 | 0.20 | 0.16 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |