METHOD about: | ../../../doc/explain_methods.html#PX_about_samt99_sec |
METHOD url: | SAM-T99sec |
TYPE : | sec |
NPROT : | 543 |
NWEEKS : | 100 |
NOTE 1 : | here ALL results obtained for SAM-T99sec in month 2002_01 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2002_01 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_01 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
sec | 2002_01 | dssp | THIS_month:psum | 79.8 | 67 | 70 | 36 | 44 | 82 | 73 | 68.6 | 77.9 | 81.5 | 68.5 | 1.1 | 0.37 | 0.38 | 0.36 | 0.72 | 0.77 | 0.59 | 91.6 | 7.5 | 3.1 |
sec | 2002_01 | dssp | 1ear:A | 79.6 | 83 | 70 | 72 | 95 | 83 | 74 | 82.7 | 85 | 85 | 77 | 2.8 | 0.44 | 0.45 | 0.45 | 0.69 | 0.75 | 0.64 | 100.0 | 4.0 | 9.0 |
sec | 2002_01 | dssp | 1hj0:A | 63.4 | 56 | 94 | 0 | 0 | 88 | 36 | 46.8 | 43 | 100 | 65 | 0.0 | 0.13 | 0.15 | 0.11 | 0.37 | 1.0 | 0.37 | 100.0 | 31.0 | 0.00 |
sec | 2002_01 | dssp | 1hty:A | 73.5 | 88 | 68 | 57 | 78 | 75 | 74 | 69.3 | 83 | 65 | 65 | 2.9 | 0.33 | 0.34 | 0.34 | 0.70 | 0.56 | 0.52 | 100.0 | 6.0 | 7.0 |
sec | 2002_01 | dssp | 1jgs:A | 84.8 | 98 | 84 | 72 | 88 | 58 | 85 | 87.8 | 98 | 81 | 66 | 0.0 | 0.52 | 0.48 | 0.57 | 0.74 | 0.78 | 0.61 | 100.0 | 10.0 | 1.0 |
sec | 2002_01 | dssp | 1jr8:A | 89.5 | 86 | 98 | 0 | 0 | 96 | 76 | 76.1 | 74 | 100 | 81 | 0.0 | 0.54 | 0.57 | 0.53 | 0.78 | 1.0 | 0.78 | 100.0 | 8.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:A | 88.7 | 85 | 96 | 0 | 0 | 94 | 76 | 75.8 | 73 | 100 | 81 | 0.0 | 0.50 | 0.52 | 0.49 | 0.76 | 1.0 | 0.76 | 100.0 | 7.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:C | 89.5 | 87 | 96 | 0 | 0 | 94 | 78 | 77.4 | 75 | 100 | 82 | 0.0 | 0.52 | 0.54 | 0.51 | 0.78 | 1.0 | 0.78 | 100.0 | 6.0 | 0.00 |
sec | 2002_01 | dssp | 1jra:D | 90.3 | 88 | 96 | 0 | 0 | 94 | 80 | 78.6 | 77 | 100 | 82 | 0.0 | 0.54 | 0.56 | 0.53 | 0.79 | 1.0 | 0.79 | 100.0 | 5.0 | 0.00 |
sec | 2002_01 | dssp | 1k2f:A | 67.4 | 52 | 57 | 58 | 86 | 84 | 61 | 65.9 | 59 | 75 | 60 | 5.2 | 0.24 | 0.23 | 0.25 | 0.44 | 0.57 | 0.48 | 100.0 | 1.0 | 13.0 |
sec | 2002_01 | dssp | 1kbe:A | 77.6 | 0 | 0 | 81 | 75 | 76 | 93 | 46.9 | 100 | 87 | 42 | 0.0 | 0.36 | 0.46 | 0.27 | 1.0 | 0.71 | 0.50 | 100.0 | 12.0 | 2.0 |
sec | 2002_01 | dssp | 1knz:A | 79.2 | 86 | 86 | 40 | 66 | 68 | 61 | 67.2 | 68 | 34 | 72 | 2.5 | 0.26 | 0.25 | 0.27 | 0.57 | 0.49 | 0.52 | 0.0 | 0.00 | 2.0 |
sec | 2002_01 | dssp | 1kov:A | 74.8 | 0 | 0 | 56 | 48 | 80 | 85 | 49.4 | 100 | 51 | 49 | 0.0 | 0.10 | 0.10 | 0.10 | 1.0 | 0.35 | 0.35 | 100.0 | 0.00 | 4.0 |
sec | 2002_01 | dssp | THIS_month:psum | 79.8 | 67 | 70 | 36 | 44 | 82 | 73 | 68.6 | 77.9 | 81.5 | 68.5 | 1.1 | 0.37 | 0.38 | 0.36 | 0.72 | 0.77 | 0.59 | 91.6 | 7.5 | 3.1 |
sec | 2002_01 | dssp | ALL_proteins:psum | 75.5 | 84 | 77 | 63 | 77 | 74 | 72 | 70.8 | 74.4 | 70.9 | 65.2 | 2.2 | 0.36 | 0.35 | 0.37 | 0.69 | 0.63 | 0.54 | 8379.3 | 6.7 | 5.5 |
sec | 2002_01 | dssp | ALL_proteins:sig | 10.0 | 32 | 30 | 34 | 40 | 17 | 15 | 14.6 | 25.7 | 26.7 | 17.6 | 3.8 | 0.25 | 0.16 | 0.44 | 0.26 | 0.25 | 0.18 | 8303.3 | 8.0 | 6.4 |
sec | 2002_01 | dssp | ALL_proteins:errsig | 0.43 | 1 | 1 | 1 | 1 | 0.75 | 0.67 | 0.62 | 1.1 | 1.1 | 0.75 | 0.16 | 0.01 | 0.00 | 0.01 | 0.01 | 0.01 | 0.00 | 356.3 | 0.34 | 0.27 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |