METHOD about: | ../../../doc/explain_methods.html#PX_about_sspro2 |
METHOD url: | SSpro2 |
TYPE : | sec |
NPROT : | 1348 |
NWEEKS : | 71 |
NOTE 1 : | here ALL results obtained for SSpro2 in month 2001_11 are given, i.e. NOT those for a common subset! |
NOTE 2 : | all proteins evaluated had no SIGNIFICANT sequence identity to any protein of previously known structure! |
type | date | sots | id | Q3 | Q3H%o | Q3H%p | Q3E%o | Q3E%p | Q3L%o | Q3L%p | sov | sovH | sovE | sovL | BAD | info | infoO | infoP | corrH | corrE | corrL | class | contDH | contDE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
sec | 2001_11 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_11 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
sec | 2001_11 | dssp | THIS_month:psum | 78.6 | 62 | 61 | 36 | 32 | 76 | 81 | 74.2 | 84.7 | 79.7 | 70.6 | 3.0 | 0.39 | 0.40 | 0.39 | 0.66 | 0.81 | 0.60 | 85.7 | 7.4 | 3.8 |
sec | 2001_11 | dssp | 1ea6:A | 92.9 | 100 | 84 | 95 | 95 | 87 | 97 | 82.1 | 100 | 100 | 70 | 0.0 | 0.77 | 0.78 | 0.76 | 0.89 | 0.93 | 0.86 | 100.0 | 4.0 | 0.00 |
sec | 2001_11 | dssp | 1ea6:B | 92.9 | 89 | 100 | 91 | 95 | 97 | 86 | 95.1 | 89 | 100 | 96 | 0.0 | 0.76 | 0.76 | 0.77 | 0.92 | 0.90 | 0.85 | 0.0 | 3.0 | 1.0 |
sec | 2001_11 | dssp | 1go9:A | 92.7 | 94 | 96 | 0 | 0 | 85 | 75 | 78.2 | 76 | 100 | 85 | 0.0 | 0.50 | 0.52 | 0.48 | 0.75 | 1.0 | 0.75 | 100.0 | 2.0 | 0.00 |
sec | 2001_11 | dssp | 1goe:A | 92.7 | 94 | 96 | 0 | 0 | 85 | 75 | 78.2 | 76 | 100 | 85 | 0.0 | 0.50 | 0.52 | 0.48 | 0.75 | 1.0 | 0.75 | 100.0 | 2.0 | 0.00 |
sec | 2001_11 | dssp | 1hdl:A | 54.5 | 53 | 65 | 50 | 16 | 57 | 52 | 58.0 | 65 | 25 | 50 | 9.0 | 0.06 | 0.07 | 0.06 | 0.13 | 0.24 | 0.24 | 100.0 | 10.0 | 7.0 |
sec | 2001_11 | dssp | 1hek:A | 75.0 | 80 | 83 | 0 | 0 | 67 | 78 | 78.2 | 88 | 100 | 68 | 1.7 | 0.26 | 0.30 | 0.23 | 0.61 | 1.0 | 0.53 | 0.0 | 1.0 | 7.0 |
sec | 2001_11 | dssp | 1i26:A | 64.7 | 0 | 0 | 0 | 0 | 78 | 88 | 38.5 | 100 | 0 | 46 | 8.8 | 0.05 | 0.06 | 0.05 | 1.0 | 1.0 | 0.24 | 100.0 | 26.0 | 17.0 |
sec | 2001_11 | dssp | 1jo6:A | 48.9 | 50 | 21 | 0 | 0 | 48 | 81 | 36.5 | 61 | 100 | 33 | 0.0 | 0.03 | 0.04 | 0.02 | 0.07 | 1.0 | -0.01 | 100.0 | 24.0 | 8.0 |
sec | 2001_11 | dssp | 1jrj:A | 87.2 | 79 | 100 | 0 | 0 | 100 | 75 | 85.5 | 87 | 100 | 82 | 0.0 | 0.55 | 0.57 | 0.55 | 0.77 | 1.0 | 0.77 | 100.0 | 12.0 | 0.00 |
sec | 2001_11 | dssp | 1jyo:E | 62.7 | 73 | 64 | 33 | 40 | 57 | 66 | 67.2 | 76 | 41 | 62 | 10.7 | 0.12 | 0.12 | 0.12 | 0.31 | 0.28 | 0.42 | 100.0 | 6.0 | 1.0 |
sec | 2001_11 | dssp | 1jyo:F | 66.3 | 70 | 66 | 50 | 33 | 65 | 80 | 69.0 | 68 | 50 | 73 | 12.5 | 0.20 | 0.21 | 0.20 | 0.36 | 0.33 | 0.56 | 100.0 | 2.0 | 4.0 |
sec | 2001_11 | dssp | 1k5j:B | 90.9 | 0 | 0 | 95 | 90 | 84 | 91 | 93.9 | 100 | 100 | 84 | 0.0 | 0.55 | 0.55 | 0.56 | 1.0 | 0.80 | 0.80 | 100.0 | 0.00 | 3.0 |
sec | 2001_11 | dssp | 1k5j:C | 93.9 | 0 | 0 | 100 | 90 | 85 | 100 | 97.0 | 100 | 100 | 92 | 0.0 | 0.72 | 0.71 | 0.73 | 1.0 | 0.88 | 0.88 | 100.0 | 0.00 | 6.0 |
sec | 2001_11 | dssp | 1k99:A | 85.7 | 98 | 80 | 0 | 0 | 70 | 96 | 81.9 | 100 | 100 | 63 | 0.0 | 0.46 | 0.44 | 0.48 | 0.72 | 1.0 | 0.72 | 100.0 | 12.0 | 0.00 |
sec | 2001_11 | dssp | THIS_month:psum | 78.6 | 62 | 61 | 36 | 32 | 76 | 81 | 74.2 | 84.7 | 79.7 | 70.6 | 3.0 | 0.39 | 0.40 | 0.39 | 0.66 | 0.81 | 0.60 | 85.7 | 7.4 | 3.8 |
sec | 2001_11 | dssp | ALL_proteins:psum | 76.8 | 81 | 83 | 65 | 76 | 80 | 73 | 71.9 | 74.8 | 70.5 | 69.4 | 2.1 | 0.38 | 0.38 | 0.39 | 0.72 | 0.62 | 0.58 | 8167.6 | 5.3 | 5.5 |
sec | 2001_11 | dssp | ALL_proteins:sig | 9.5 | 28 | 28 | 30 | 35 | 11 | 11 | 13.8 | 24.4 | 24.8 | 14.1 | 3.7 | 0.19 | 0.15 | 0.30 | 0.21 | 0.23 | 0.15 | 8089.0 | 6.8 | 6.5 |
sec | 2001_11 | dssp | ALL_proteins:errsig | 0.25 | 0.77 | 0.77 | 0.82 | 0.97 | 0.31 | 0.30 | 0.37 | 0.66 | 0.67 | 0.38 | 0.10 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 220.3 | 0.18 | 0.18 |
psum | percentage over all proteins |
sig | standard deviation |
errsig | significant difference (to distinguish between two methods) |
type | prediction type |
date | date when added [yyyy_mm_dd] |
sots | standard of truth |
id | identifier of protein |
Q3 | three-state per-residue accuracy (percentage of correctly predicted residues) |
Q3H%o | correctly predicted helix residues (percentage of helix observed) |
Q3H%p | correctly predicted helix residues (percentage of helix predicted) |
Q3E%o | correctly predicted strand residues (percentage of helix observed) |
Q3E%p | correctly predicted strand residues (percentage of helix predicted) |
Q3L%o | correctly predicted loop residues (percentage of helix observed) |
Q3L%p | correctly predicted loop residues (percentage of helix predicted) |
sov | per segment accuracy (three states) |
sovH | per segment accuracy for helix residues |
sovE | per segment accuracy for strand residues |
sovL | per segment accuracy for non-regular residues |
BAD | percentage of confused HELIX/STRAND residues (helix predicted as strand, strand predicted as helix) |
infoO | information index accuracy (percentage of observed) |
infoP | information index accuracy (percentage of predicted) |
corrH | Matthews correlation index for helix |
corrE | Matthews correlation index for strand |
corrL | Matthews correlation index for loop |
var | variance over all proteins (1/N-1)*( score(i) - |
sig | sigma (standard deviation) over all proteins (sqrt[var]) |
errsig | significant differences ( standard dev / sqrt(Nprot) ) |